Evidence map›Paper›PMID 29992797›Full record

ArticleJournal of biomedical optics2018

Evaluating integrin activation with time-resolved flow cytometry.

Jesus Sambrano, Alexandre Chigaev, Kapil S Nichani, Yelena Smagley, Larry A Sklar, Jessica P Houston

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Visualization of integrin molecules by fluorescence imaging and techniques.Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al · 2021
    Article
  6. Evaluation of Caspase-3 Activity During Apoptosis with Fluorescence Lifetime-Based Cytometry Measurements and Phasor Analyses.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jesus SambranoNew Mexico State University, Department of Chemical and Materials Engineering, Las Cruces, New Mexic, United States.
Alexandre ChigaevUniversity of New Mexico, School of Medicine and Center for Molecular Discovery, Albuquerque, New Me, United States.
Kapil S NichaniNew Mexico State University, Department of Chemical and Materials Engineering, Las Cruces, New Mexic, United States.
Yelena SmagleyUniversity of New Mexico, School of Medicine and Center for Molecular Discovery, Albuquerque, New Me, United States.
Larry A SklarUniversity of New Mexico, School of Medicine and Center for Molecular Discovery, Albuquerque, New Me, United States.
Jessica P HoustonNew Mexico State University, Department of Chemical and Materials Engineering, Las Cruces, New Mexic, United States.

Funding

RISE PROGRAM AT NEW MEXICO STATE UNIVERSITYR25GM061222 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI HOUSTON, JESSICA PEREA, REDDI, LAKSHMI · 2000 to 2022
$21.3M
Microflow time-resolved cytometry for FRET and fluorescent protein developmentR01GM129859 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI HOUSTON, JESSICA PEREA · 2018 to 2021
$1.3M
A high-throughput approach to quantify cellular integrin conformation and cell differentiation using multiharmonic, multicolor fluorescence lifetime-dependent flow cytometryF31EB023139 · NIBIB · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI SAMBRANO, JESUS SALVADOR · 2016 to 2018
$52k
NIBIB NIH HHS F31 EB023139NIGMS NIH HHS R01 GM129859NIGMS NIH HHS R25 GM061222
6 · The paper itself

Abstract

Förster resonance energy transfer (FRET) continues to be a useful tool to study movement and interaction between proteins within living cells. When FRET as an optical technique is measured with flow cytometry, conformational changes of proteins can be rapidly measured cell-by-cell for the benefit of screening and profiling. We exploit FRET to study the extent of activation of α4β1 integrin dimers expressed on the surface of leukocytes. The stalk-like transmembrane heterodimers when not active lay bent and upon activation extend outward. Integrin extension is determined by changes in the distance of closest approach between an FRET donor and acceptor, bound at the integrin head and cell membrane, respectively. Time-resolved flow cytometry analysis revealed donor emission increases up to 17%, fluorescence lifetime shifts over 1.0 ns during activation, and FRET efficiencies of 37% and 26% corresponding to the inactive and active integrin state, respectively. Last, a graphical phasor analysis, including population clustering, gating, and formation of an FRET trajectory, added precision to a comparative analysis of populations undergoing FRET, partial donor recovery, and complete donor recovery. This work establishes a quantitative cytometric approach for profiling fluorescence donor decay kinetics during integrin conformational changes on a single-cell level.

Indexed as

Cell Line, TumorFlow CytometryFluorescence Resonance Energy TransferHumansIntegrinsProtein ConformationSignal Processing, Computer-AssistedIntegrinsflow cytometryfluorescence lifetimeFörster resonance energy transferintegrin activationphasor analysisprotein conformation

Identifiers

PMID29992797
PMCPMC6232766

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.