Evidence map›Paper›PMID 29992702›Full record

ArticlePlant biotechnology journal2019

The red bayberry genome and genetic basis of sex determination.

Hui-Min Jia, Hui-Juan Jia, Qing-Le Cai, Yan Wang, Hai-Bo Zhao, Wei-Fei Yang, Guo-Yun Wang, Ying-Hui Li, Dong-Liang Zhan, Yu-Tong Shen and 17 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
11.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 66 citations in OpenAlex.

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  19. An Anthocyanin-Related GlutathioneFrontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 12 institutions in 5 countries.

Hui-Min JiaInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Hui-Juan JiaInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Qing-Le CaiHangzhou 1 Gene Ltd, Hangzhou, China.
Yan WangInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Hai-Bo ZhaoInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Wei-Fei YangHangzhou 1 Gene Ltd, Hangzhou, China.
Guo-Yun WangForestry Technology Extension Center, Yuyao, Ningbo, China.
Ying-Hui LiThe National Key Facility for Crop Gene Resources and Genetic Improvement (NFCRI), Institute of Crop Science, Chinese Academy of Agricultural Sciences, Beijing, China.
Dong-Liang ZhanHangzhou 1 Gene Ltd, Hangzhou, China.
Yu-Tong ShenInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Qing-Feng NiuInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Le ChangInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Jie QiuInstitute of Crop Science & Institute of Bioinformatics, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Lan ZhaoInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Han-Bing XieInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Wan-Yi FuInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Jing JinInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Xiong-Wei LiForest & Fruit Tree Institute, Shanghai Academy of Agricultural Sciences, Shanghai, China.
Yun JiaoInstitute of Forestry, Ningbo Academy of Agricultural Science, Ningbo, China.
Chao-Chao ZhouForestry Technology Extension Center, Yuyao, Ningbo, China.
Ting TuShunmei Breeding and Propagation Centre for Chinese Bayberry, Yuyao, China.
Chun-Yan ChaiForestry Technology Extension Center, Cixi, China.
Jin-Long GaoHangzhou 1 Gene Ltd, Hangzhou, China.
Long-Jiang FanInstitute of Crop Science & Institute of Bioinformatics, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Eric van de WegPlant Breeding-Wageningen University and Research, Wageningen, The Netherlands.
Jun-Yi WangHangzhou 1 Gene Ltd, Hangzhou, China.
Zhong-Shan GaoInstitute of Fruit Science, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, China.
Fruit Research Institute · CNHangzhou Cancer Hospital · CNZhejiang University · CNExperimental Center of Forestry in North China · CNBay Institute · USChinese Academy of Sciences · CNGraduate School Experimental Plant Sciences · NLInstitute of Crop Science · JPInstitute of Crop Sciences · CNMinistry of Agriculture and Forestry · LANingbo Academy of Agricultural Sciences · CNShanghai Academy of Agricultural Sciences · CN

Funding

Agriculture and Forestry Bureau of Yuyao City 2013-2016National Natural Science Foundation of China 31471843National Natural Science Foundation of China 31772271Ningbo Science and Technology Research Grant 2016C10021
6 · The paper itself

Abstract

Morella rubra, red bayberry, is an economically important fruit tree in south China. Here, we assembled the first high-quality genome for both a female and a male individual of red bayberry. The genome size was 313-Mb, and 90% sequences were assembled into eight pseudo chromosome molecules, with 32 493 predicted genes. By whole-genome comparison between the female and male and association analysis with sequences of bulked and individual DNA samples from female and male, a 59-Kb region determining female was identified and located on distal end of pseudochromosome 8, which contains abundant transposable element and seven putative genes, four of them are related to sex floral development. This 59-Kb female-specific region was likely to be derived from duplication and rearrangement of paralogous genes and retained non-recombinant in the female-specific region. Sex-specific molecular markers developed from candidate genes co-segregated with sex in a genetically diverse female and male germplasm. We propose sex determination follow the ZW model of female heterogamety. The genome sequence of red bayberry provides a valuable resource for plant sex chromosome evolution and also provides important insights for molecular biology, genetics and modern breeding in Myricaceae family.

Indexed as

Evolution, MolecularChromosome MappingFlowersFruitGenetic MarkersGenome, PlantMolecular Sequence AnnotationMyricaOrgan SpecificityPlant BreedingGenetic MarkersgenomeMorella rubrasex-determining regionsex-linked marker

Identifiers

PMID29992702
PMCPMC6335074
OpenAlexW2872718641

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.