Evidence map›Paper›PMID 29992629›Full record

ArticleMycoses2018

Genetic diversity of Pneumocystis jirovecii from a cluster of cases of pneumonia in renal transplant patients: Cross-sectional study.

Giannina Ricci, Daniel Wagner Santos, Joseph A Kovacs, Angela Satie Nishikaku, Taina Veras de Sandes-Freitas, Anderson Messias Rodrigues, Geetha Kutty, Regina Affonso, Hélio Tedesco Silva, José Osmar Medina-Pestana and 2 more

Abstract read
In one paragraph

Article in Mycoses, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Trends in the Epidemiology ofJournal of fungi (Basel, Switzerland) · 2023
    Review
  3. Multilocus Genotyping ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  4. Update on Dihydropteroate Synthase (DHPS) Mutations inJournal of fungi (Basel, Switzerland) · 2021
    Review
  5. A New Duplex PCR-Assay for the Detection and Identification ofJournal of fungi (Basel, Switzerland) · 2021
    Article
  6. Consensus Multilocus Sequence Typing Scheme forJournal of fungi (Basel, Switzerland) · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Giannina RicciSpecial Mycology Laboratory, Division of Infectious Diseases, Department of Medicine, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.ORCID http://orcid.org/0000-0002-4197-7905
Daniel Wagner SantosSpecial Mycology Laboratory, Division of Infectious Diseases, Department of Medicine, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.
Joseph A KovacsCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland.
Angela Satie NishikakuSpecial Mycology Laboratory, Division of Infectious Diseases, Department of Medicine, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.
Taina Veras de Sandes-FreitasHospital do Rim, Fundação Oswaldo Ramos, São Paulo, SP, Brazil.
Anderson Messias RodriguesMolecular Biology Division, Department of Microbiology, Immunology and Parasitology (DMIP), Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.
Geetha KuttyCritical Care Medicine Department, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland.
Regina AffonsoBiotechnology Center, Nuclear and Energy Research Institute (IPEN), São Paulo, SP, Brazil.
Hélio Tedesco SilvaHospital do Rim, Fundação Oswaldo Ramos, São Paulo, SP, Brazil.
José Osmar Medina-PestanaHospital do Rim, Fundação Oswaldo Ramos, São Paulo, SP, Brazil.
Marcello Fabiano de FrancoPathology Department, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.
Arnaldo Lopes ColomboSpecial Mycology Laboratory, Division of Infectious Diseases, Department of Medicine, Universidade Federal de São Paulo (UNIFESP), São Paulo, SP, Brazil.
Universidade Federal de São Paulo · BRHospital do Rim e Hipertensão · BRNational Institutes of Health Clinical Center · USNational Nuclear Energy Commission · BR

Funding

Molecular Studies Of Human Pneumocystis CariniiZIACL000192 · CLC · CLINICAL CENTER · PI KOVACS, JOSEPH A · 2009 to 2025
$0k
Fundação de Amparo à Pesquisa do Estado de São Paulo, Brazil 2013/01280-7Fundação Oswaldo Ramos, São Paulo, SP, BrazilIntramural NIH HHS ZIA CL000192Intramural Research Program of the NIH Clinical Center
6 · The paper itself

Abstract

Pneumocystis jirovecii can cause severe potentially life-threatening pneumonia (PCP) in kidney transplant patients. Prophylaxis of patients against PCP in this setting is usually performed during 6 months after transplantation. The aim of this study is to describe the molecular epidemiology of a cluster of PCP in renal transplant recipients in Brazil. Renal transplant patients who developed PCP between May and December 2011 had their formalin-fixed paraffin-embedded (FFPE) lung biopsy samples analysed. Pneumocystis jirovecii 23S mitochondrial large subunit of ribosomal RNA (23S mtLSU-rRNA), 26S rRNA, and dihydropteroate synthase (DHPS) genes were amplified by polymerase chain reaction (PCR), sequenced, and analysed for genetic variation. During the study period, 17 patients developed PCP (only four infections were documented within the first year after transplantation) and six (35.3%) died. Thirty FFPE samples from 11 patients, including one external control HIV-infected patient, had fungal DNA successfully extracted for further amplification and sequencing for all three genes. A total of five genotypes were identified among the 10 infected patients. Of note, four patients were infected by more than one genotype and seven patients were infected by the same genotype. DNA extracted from FFPE samples can be used for genotyping; this approach allowed us to demonstrate that multiple P. jirovecii strains were responsible for this cluster, and one genotype was found infecting seven patients. The knowledge of the causative agents of PCP may help to develop new initiatives for control and prevention of PCP among patients undergoing renal transplant and improve routine PCP prophylaxis.

Indexed as

Genetic VariationAdultBrazilCross-Sectional StudiesDNA, FungalFemaleGenotypeHumansKidney TransplantationMaleMiddle AgedPhylogenyPneumocystisPneumonia, PneumocystisPostoperative ComplicationsRetrospective StudiesDNA, Fungalgenotyping of Pneumocystis jiroveciikidney transplantationPneumocystispneumocystosis

Identifiers

PMID29992629
PMCPMC6188827
OpenAlexW2826651595

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.