Evidence map›Paper›PMID 29992239›Full record

ArticleJournal of experimental botany2018

Light-regulated PAS-containing histidine kinases delay gametophore formation in the moss Physcomitrella patens.

Masashi Ryo, Takafumi Yamashino, Yuji Nomoto, Yuki Goto, Mizuho Ichinose, Kensuke Sato, Mamoru Sugita, Setsuyuki Aoki

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Masashi RyoGraduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Takafumi YamashinoGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Yuji NomotoGraduate School of Bioagricultural Sciences, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Yuki GotoGraduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Mizuho IchinoseCenter for Gene Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Kensuke SatoGraduate School of Informatics, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Mamoru SugitaCenter for Gene Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Setsuyuki AokiGraduate School of Information Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Japan.
Nagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two-component systems (TCSs) are signal transduction mechanisms for responding to various environmental stimuli. In angiosperms, TCSs involved in phytohormone signaling have been intensively studied, whereas there are only a few reports on TCSs in basal land plants. The moss Physcomitrella patens possesses several histidine kinases (HKs) that are lacking in seed plant genomes. Here, we studied two of these unique HKs, PAS-histidine kinase 1 (PHK1) and its paralog PHK2, both of which have PAS (Per-Arnt-Sim) domains, which are known to show versatile functions such as sensing light or molecular oxygen. We found homologs of PHK1 and PHK2 only in early diverged clades such as bryophytes and lycophytes, but not in seed plants. The PAS sequences of PHK1 and PHK2 are more similar to a subset of bacterial PAS sequences than to any angiosperm PAS sequences. Gene disruption lines that lack either PHK1 or PHK2 or both formed gametophores earlier than the wild-type, and consistently, more caulonema side branches were induced in response to light in the disruption lines. Therefore, PHK1 and PHK2 delay the timing of gametophore development, probably by suppressing light-induced caulonema branching. This study provides new insights into the evolution of TCSs in plants.

Indexed as

Amino Acid SequenceBryopsidaGene Expression Regulation, PlantGerm Cells, PlantHistidine KinasePhylogenyPlant ProteinsSequence AlignmentSignal TransductionHistidine KinasePlant Proteins

Identifiers

PMID29992239
PMCPMC6137987
OpenAlexW2846199241

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.