Evidence map›Paper›PMID 29991969›Full record

ArticleClinical epigenetics2018

Promoter methylation of the

Marija Klasić, Dora Markulin, Aleksandar Vojta, Ivana Samaržija, Ivan Biruš, Paula Dobrinić, Nicholas T Ventham, Irena Trbojević-Akmačić, Mirna Šimurina, Jerko Štambuk and 11 more

Open access · goldAbstract read
In one paragraph

Article in Clinical epigenetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Epigenetic Regulation of Glycosylation in Cancer and Other Diseases.International journal of molecular sciences · 2021
    Review
  11. Immunoglobulin G Glycosylation in Diseases.Experientia supplementum (2012) · 2021
    Article
  12. Epigenetic Regulation of Glycosylation.Advances in experimental medicine and biology · 2021
    Article
  13. Epigenetics of Immunoglobulin G Glycosylation.Experientia supplementum (2012) · 2021
    Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 9 institutions in 5 countries.

Marija Klasić *1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Dora Markulin *1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Aleksandar Vojta1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Ivana Samaržija1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Ivan Biruš1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Paula Dobrinić1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
Nicholas T Ventham2Gastrointestinal Unit, Centre for Genomics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 6XU UK.
Irena Trbojević-AkmačićGenos Glycoscience Research Laboratory, Borongajska cesta 83h, 10000 Zagreb, Croatia.
Mirna ŠimurinaGenos Glycoscience Research Laboratory, Borongajska cesta 83h, 10000 Zagreb, Croatia.
Jerko ŠtambukGenos Glycoscience Research Laboratory, Borongajska cesta 83h, 10000 Zagreb, Croatia.
Genadij RazdorovGenos Glycoscience Research Laboratory, Borongajska cesta 83h, 10000 Zagreb, Croatia.
Nicholas A Kennedy2Gastrointestinal Unit, Centre for Genomics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 6XU UK.
Jack Satsangi2Gastrointestinal Unit, Centre for Genomics and Molecular Medicine, University of Edinburgh, Edinburgh, EH4 6XU UK.
Ana M Dias6Institute of Molecular Pathology and Immunology of the University of Porto (IPATIMUP), Porto, Portugal.
Salome Pinho6Institute of Molecular Pathology and Immunology of the University of Porto (IPATIMUP), Porto, Portugal.
Vito Annese7Department of Medical and Surgical Sciences, Division of Gastroenterology, University Hospital Careggi, Florence, Italy.
Anna LatianoDepartment of Medical Sciences, Division of Gastroenterology, IRCCS-CSS Hospital, Viale Cappuccini, Rotondo, Italy.
Renata D'Inca9Gastrointestinal Unit, University of Padua, Padua, Italy.
IBD consortium
Gordan LaucGenos Glycoscience Research Laboratory, Borongajska cesta 83h, 10000 Zagreb, Croatia.
Vlatka Zoldoš1Department of Biology, Division of Molecular Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia.
University of Zagreb · HRScience Research Laboratory · USUniversidade do Porto · PTAzienda Ospedaliero-Universitaria Careggi · ITEdinburgh Genomics · GBIstituti di Ricovero e Cura a Carattere Scientifico · ITUniversity of Edinburgh · GBUniversity of Exeter · GBUniversity of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Many genome- and epigenome-wide association studies (GWAS and EWAS) and studies of promoter methylation of candidate genes for inflammatory bowel disease (IBD) have demonstrated significant associations between genetic and epigenetic changes and IBD. Independent GWA studies have identified genetic variants in the Methods: Using bisulfite pyrosequencing, we analyzed CpG methylation in promoter regions of these five genes from peripheral blood of several hundred IBD patients and healthy controls (HCs) from two independent cohorts, respectively. Results: We found significant differences in the methylation levels in the Conclusions: Our results suggest that epigenetic deregulation of key glycosylation genes might lead to an increase in pro-inflammatory properties of IgG in IBD through a decrease in galactosylation and sialylation and an increase of bisecting GlcNAc on digalactosylated glycan structures. Finally, we showed that CpG methylation in the promoter of the

Indexed as

DNA MethylationBasic-Leucine Zipper Transcription FactorsCase-Control StudiesColitis, UlcerativeCrohn DiseaseEpigenesis, GeneticFemaleGenome-Wide Association StudyGlycoproteinsHumansImmunoglobulin GInflammatory Bowel DiseasesMaleN-AcetylglucosaminyltransferasesPolysaccharidesPromoter Regions, GeneticBACH2 protein, humanBasic-Leucine Zipper Transcription Factorsbeta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferaseGlycoproteinsglycosylated IgGImmunoglobulin GN-AcetylglucosaminyltransferasesPolysaccharides

Identifiers

PMID29991969
PMCPMC5987481
OpenAlexW2807579621

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.