Evidence map›Paper›PMID 29991962›Full record

ArticleBiotechnology for biofuels2018

Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium

Madan Kumar, Sandhya Verma, Rajesh Kumar Gazara, Manish Kumar, Ashok Pandey, Praveen Kumar Verma, Indu Shekhar Thakur

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 106 citations in OpenAlex.

  1. Microorganisms · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. The chemical logic of enzymatic lignin degradation.Chemical communications (Cambridge, England) · 2024
    Review
  8. Article
  9. Article
  10. The Study of Potentially Lignocellulolytic ActinobacteriaIndian journal of microbiology · 2023
    Article
  11. Review
  12. Review
  13. Unveiling lignocellulolytic trait of a goat omasum inhabitant Klebsiella variicola strain HSTU-AAM51 in light of biochemical and genome analyses.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Article
  14. ThermophilicFrontiers in microbiology · 2022
    Article
  15. Endophytes in Lignin Valorization: A Novel Approach.Frontiers in bioengineering and biotechnology · 2022
    Review
  16. Review
  17. Article
  18. Review
  19. DyP-Type Peroxidases: Recent Advances and Perspectives.International journal of molecular sciences · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Madan Kumar1School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Sandhya Verma2National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067 India.
Rajesh Kumar Gazara2National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067 India.
Manish Kumar1School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Ashok Pandey3CSIR-Indian Institute of Toxicology Research, 31 MG Marg, Lucknow, 226 001 India.
Praveen Kumar Verma2National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi, 110067 India.
Indu Shekhar Thakur1School of Environmental Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
Jawaharlal Nehru University · INNational Institute of Plant Genome Research · INIndian Institute of Toxicology Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLignin is a major component of plant biomass and is recalcitrant to degradation due to its complex and heterogeneous aromatic structure. The biomass-based research mainly focuses on polysaccharides component of biomass and lignin is discarded as waste with very limited usage. The sustainability and success of plant polysaccharide-based biorefinery can be possible if lignin is utilized in improved ways and with minimal waste generation. Discovering new microbial strains and understanding their enzyme system for lignin degradation are necessary for its conversion into fuel and chemicals. The

resultsGenomic analysis of

conclusionsThe unusual aerobic '-CoA'-mediated degradation pathway of phenylacetate and benzoate (reported only in 16 and 4-5% of total sequenced bacterial genomes), peroxidase-accessory enzyme system, and fenton chemistry based are the major pathways observed for lignin degradation. Both

Indexed as

Gene clusterGenomicsLabel-free quantificationLigninPolyhydroxyalkanoateVanillic acid

Identifiers

PMID29991962
PMCPMC5987411
OpenAlexW2805973345

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.