Evidence map›Paper›PMID 29991818›Full record

ArticleScientific reports2018

Independent losses of a xenobiotic receptor across teleost evolution.

Marta Eide, Halfdan Rydbeck, Ole K Tørresen, Roger Lille-Langøy, Pål Puntervoll, Jared V Goldstone, Kjetill S Jakobsen, John Stegeman, Anders Goksøyr, Odd A Karlsen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Prioritising research on endocrine disruption in the marine environment: a global perspective.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. A genome assembly of the Atlantic chub mackerel (GigaByte (Hong Kong, China) · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Molecular and Functional Properties of the Atlantic Cod (Environmental science & technology · 2020
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Marta EideDepartment of Biological Sciences, University of Bergen, Bergen, Norway.
Halfdan RydbeckCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Ole K TørresenCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.
Roger Lille-LangøyDepartment of Biological Sciences, University of Bergen, Bergen, Norway.
Pål PuntervollCentre for Applied Biotechnology, Uni Research Environment, Bergen, Norway.
Jared V GoldstoneBiology Department MS, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Kjetill S JakobsenCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway.ORCID 0000-0002-8861-5397
John StegemanBiology Department MS, Woods Hole Oceanographic Institution, Woods Hole, MA, USA.
Anders GoksøyrDepartment of Biological Sciences, University of Bergen, Bergen, Norway.
Odd A KarlsenDepartment of Biological Sciences, University of Bergen, Bergen, Norway. odd.karlsen@uib.no.
University of Bergen · NOUniversity of Oslo · NOWoods Hole Oceanographic Institution · USUni Research (Norway) · NO

Funding

Training CoreP42ES007381 · NIEHS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI SHERR, DAVID H · 1995 to 2019
$46.1M
Nomenclature of Human and Vertebrate GenesU41HG003345 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN, BRUFORD, ELSPETH · 2013 to 2017
$2.4M
TALENs-based PXR Knockout and Humanized ZebrafishR21HD073805 · NICHD · WOODS HOLE OCEANOGRAPHIC INSTITUTION · PI GOLDSTONE, JARED VERRILL · 2013 to 2014
$454k
Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) P42ES007381Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.) R21HD073805NHGRI NIH HHS U41 HG003345NICHD NIH HHS R21 HD073805NIEHS NIH HHS P42 ES007381Norges Forskningsråd (Research Council of Norway) 192441/I30Norges Forskningsråd (Research Council of Norway) 222378Norges Forskningsråd (Research Council of Norway) 244654/E40Norges Forskningsråd (Research Council of Norway) 248840
6 · The paper itself

Abstract

Sensitivity to environmental stressors largely depend on the genetic complement of the organism. Recent sequencing and assembly of teleost fish genomes enable us to trace the evolution of defense genes in the largest and most diverse group of vertebrates. Through genomic searches and in-depth analysis of gene loci in 76 teleost genomes, we show here that the xenosensor pregnane X receptor (Pxr, Nr1i2) is absent in more than half of these species. Notably, out of the 27 genome assemblies that belong to the Gadiformes order, the pxr gene was only retained in the Merluccidae family (hakes) and Pelagic cod (Melanonus zugmayeri). As an important receptor for a wide range of drugs and environmental pollutants, vertebrate PXR regulate the transcription of a number of genes involved in the biotransformation of xenobiotics, including cytochrome P450 enzymes (CYP). In the absence of Pxr, we suggest that the aryl hydrocarbon receptor (Ahr) have evolved an extended regulatory role by governing the expression of certain Pxr target genes, such as cyp3a, in Atlantic cod (Gadus morhua). However, as several independent losses of pxr have occurred during teleost evolution, other lineages and species may have adapted alternative compensating mechanisms for controlling crucial cellular defense mechanisms.

Indexed as

Evolution, MolecularAnimalsCytochrome P-450 Enzyme SystemGadiformesGenomePhylogenyPregnane X ReceptorReceptors, Aryl HydrocarbonXenobioticsCytochrome P-450 Enzyme SystemPregnane X ReceptorReceptors, Aryl HydrocarbonXenobiotics

Identifiers

PMID29991818
PMCPMC6039460
OpenAlexW2810424681

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.