Evidence map›Paper›PMID 29991804›Full record

ArticleScientific reports2018

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus.

Inga Reich, Umer Zeeshan Ijaz, Mike Gormally, Cindy J Smith

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Gut microbiota in parasite-transmitting gastropods.Infectious diseases of poverty · 2023
    Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Inga ReichApplied Ecology Unit, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland. reichi@oregonstate.edu.
Umer Zeeshan IjazSchool of Engineering, University of Glasgow, Glasgow, Scotland, UK. Umer.Ijaz@glasgow.ac.uk.ORCID 0000-0001-5780-8551
Mike GormallyApplied Ecology Unit, School of Natural Sciences, National University of Ireland Galway, Galway, Ireland.
Cindy J SmithSchool of Engineering, University of Glasgow, Glasgow, Scotland, UK. Cindy.Smith@glasgow.ac.uk.ORCID 0000-0003-4905-0730

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The EU-protected slug Geomalacus maculosus Allman occurs only in the West of Ireland and in northern Spain and Portugal. We explored the microbial community found within the faeces of Irish specimens with a view to determining whether a core microbiome existed among geographically isolated slugs which could give insight into the adaptations of G. maculosus to the available food resources within its habitat. Faecal samples of 30 wild specimens were collected throughout its Irish range and the V3 region of the bacterial 16S rRNA gene was sequenced using Illumina MiSeq. To investigate the influence of diet on the microbial composition, faecal samples were taken and sequenced from six laboratory reared slugs which were raised on two different foods. We found a widely diverse microbiome dominated by Enterobacteriales with three core OTUs shared between all specimens. While the reared specimens appeared clearly separated by diet in NMDS plots, no significant difference between the slugs fed on the two different diets was found. Our results indicate that while the majority of the faecal microbiome of G. maculosus is probably dependent on the microhabitat of the individual slugs, parts of it are likely selected for by the host.

Indexed as

PhylogenyAnimalsBiodiversityComputational BiologyFecesGastropodaHigh-Throughput Nucleotide SequencingIrelandMicrobiotaPortugalRNA, Ribosomal, 16SSequence Analysis, DNASpainRNA, Ribosomal, 16S

Identifiers

PMID29991804
PMCPMC6039444

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.