Evidence map›Paper›PMID 29991751›Full record

ArticleScientific reports2018

Volumetric, Nanoscale Optical Imaging of Mouse and Human Kidney via Expansion Microscopy.

Tyler J Chozinski, Chenyi Mao, Aaron R Halpern, Jeffrey W Pippin, Stuart J Shankland, Charles E Alpers, Behzad Najafian, Joshua C Vaughan

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
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  9. Three-dimensional visualization of the cardiac ryanodine receptor clusters and the molecular-scale fraying of dyads.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  10. Review
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  15. Complexities of the glomerular basement membrane.Nature reviews. Nephrology · 2021
    Review
  16. Imaging the kidney: from light to super-resolution microscopy.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2021
    Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tyler J ChozinskiDepartment of Chemistry, University of Washington, Seattle, Washington, 98195, USA.
Chenyi MaoDepartment of Chemistry, University of Washington, Seattle, Washington, 98195, USA.
Aaron R HalpernDepartment of Chemistry, University of Washington, Seattle, Washington, 98195, USA.
Jeffrey W PippinDepartment of Medicine, Division of Nephrology, University of Washington, Seattle, Washington, 98195, USA.
Stuart J ShanklandDepartment of Medicine, Division of Nephrology, University of Washington, Seattle, Washington, 98195, USA.
Charles E AlpersDepartment of Pathology, University of Washington, Seattle, Washington, 98195, USA.
Behzad NajafianDepartment of Pathology, University of Washington, Seattle, Washington, 98195, USA.
Joshua C VaughanDepartment of Chemistry, University of Washington, Seattle, Washington, 98195, USA. jcv2@uw.edu.ORCID 0000-0002-6550-8935
University of Washington · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Transform Dissemination and Implementation Science in CTSA ProgramsUL1TR002319 · NCATS · UNIVERSITY OF WASHINGTON · PI John K. Amory · 2017 to 2026
$100.0M
Institute of Translational Health SciencesUL1TR000423 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$49.4M
Coordinating and Bioinformatics Unit for the MMPC/DiaCompU24DK076169 · NIDDK · AUGUSTA UNIVERSITY · PI MCINDOE, RICHARD A. · 2006 to 2018
$42.4M
Coordinating Unit for DiaCompU24DK115255 · NIDDK · AUGUSTA UNIVERSITY · PI MCINDOE, RICHARD A. · 2017 to 2020
$11.6M
Juxta-glomerular cells serve as glomerular epithelial cell progenitors in glomerular diseaseR01DK097598 · NIDDK · UNIVERSITY OF WASHINGTON · PI SHANKLAND, STUART JAMES, WESSELY, OLIVER · 2014 to 2022
$5.2M
Spatially Resolved Transcriptomics Enabled by Ultrabright Pdot Probes for Interrogation of Complex TissuesR01MH115767 · NIMH · UNIVERSITY OF WASHINGTON · PI CHIU, DANIEL T, VAUGHAN, JOSHUA · 2017 to 2021
$3.7M
Reduced Glomerular Progenitors Impair Regeneration in Aged KidneyR01AG046231 · NIA · UNIVERSITY OF WASHINGTON · PI SHANKLAND, STUART JAMES · 2016 to 2020
$2.6M
Rebuilding the glomerular filtration barrier by regenerating adult podocytesUH3DK107343 · NIDDK · UNIVERSITY OF WASHINGTON · PI SHANKLAND, STUART JAMES, ZHENG, YING · 2017 to 2019
$1.3M
NCATS NIH HHS UL1 TR000423NCATS NIH HHS UL1 TR002319NCI NIH HHS P30 CA015704NIA NIH HHS R01 AG046231NIDDK NIH HHS R01 DK097598NIDDK NIH HHS U24 DK076169NIDDK NIH HHS U24 DK115255NIDDK NIH HHS UH3 DK107343NIMH NIH HHS R01 MH115767Wellcome Trust
6 · The paper itself

Abstract

Although light microscopy is a powerful tool for the assessment of kidney physiology and pathology, it has traditionally been unable to resolve structures separated by less than the ~250 nm diffraction limit of visible light. Here, we report on the optimization, validation, and application of a recently developed super-resolution fluorescence microscopy method, called expansion microscopy (ExM), for volumetric interrogation of mouse and human kidney tissue with 70-75 nm lateral and ~250 nm axial spatial resolution. Using ExM with a standard confocal microscope, we resolve fine details of structures that have traditionally required visualization by electron microscopy, including podocyte foot processes, the glomerular basement membrane, and the cytoskeleton. This inexpensive and accessible approach to volumetric, nanoscale imaging enables visualization of fine structural details of kidney tissues that were previously difficult or impossible to measure by conventional methodologies.

Indexed as

AnimalsFluorescent DyesHumansKidneyMiceMicroscopy, ConfocalMicroscopy, FluorescenceMicrotubulesOptical ImagingFluorescent Dyes

Identifiers

PMID29991751
PMCPMC6039510
OpenAlexW2810738194

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.