Evidence map›Paper›PMID 29991682›Full record

ArticleScientific reports2018

Stochastic sequestration dynamics: a minimal model with extrinsic noise for bimodal distributions and competitors correlation.

Marco Del Giudice, Carla Bosia, Silvia Grigolon, Stefano Bo

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. microRNA-mediated noise processing in cells: A fight or a game?Computational and structural biotechnology journal · 2020
    Review
  5. Review
  6. Competing endogenous RNA crosstalk at system level.PLoS computational biology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marco Del GiudiceDepartment of Applied Science and Technology, Politecnico di Torino corso Duca degli Abruzzi 24, Turin, IT-10129, Italy.ORCID 0000-0002-9231-6226
Carla BosiaDepartment of Applied Science and Technology, Politecnico di Torino corso Duca degli Abruzzi 24, Turin, IT-10129, Italy.
Silvia GrigolonThe Francis Crick Institute, 1, Midland Road, London, NW1 1AT, United Kingdom.
Stefano BoNordita, Royal Institute of Technology and Stockholm University, Roslagstullsbacken 23, SE-106 91, Stockholm, Sweden. stefano.bo@nordita.org.ORCID 0000-0002-2738-867X

Funding

Cancer Research UK 21144Cancer Research UK FC001317Medical Research Council FC001317Wellcome TrustWellcome Trust FC001317
6 · The paper itself

Abstract

Many biological processes are known to be based on molecular sequestration. This kind of dynamics involves two types of molecular species, namely targets and sequestrants, that bind to form a complex. In the simple framework of mass-action law, key features of these systems appear to be threshold-like profiles of the amounts of free molecules as a function of the parameters determining their possible maximum abundance. However, biochemical processes are probabilistic and take place in stochastically fluctuating environments. How these different sources of noise affect the final outcome of the network is not completely characterised yet. In this paper we specifically investigate the effects induced by a source of extrinsic noise onto a minimal stochastic model of molecular sequestration. We analytically show how bimodal distributions of the targets can appear and characterise them as a result of noise filtering mediated by the threshold response. We then address the correlations between target species induced by the sequestrant and discuss how extrinsic noise can turn the negative correlation caused by competition into a positive one. Finally, we consider the more complex scenario of competitive inhibition for enzymatic kinetics and discuss the relevance of our findings with respect to applications.

Identifiers

PMID29991682
PMCPMC6039506

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.