Evidence map›Paper›PMID 29987661›Full record

ArticleJournal of the American Society for Mass Spectrometry2018

Method for Quantifying Oxidized Methionines and Application to HIV-1 Env.

Joshua T Shipman, Eden P Go, Heather Desaire

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.6field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Joshua T ShipmanDepartment of Chemistry, University of Kansas, Lawrence, KS, 66045, USA.
Eden P GoDepartment of Chemistry, University of Kansas, Lawrence, KS, 66045, USA.
Heather DesaireDepartment of Chemistry, University of Kansas, Lawrence, KS, 66045, USA. hdesaire@ku.edu.ORCID http://orcid.org/0000-0002-2181-0112
University of Kansas · US

Funding

PHARMACEUTICAL ASPECTS OF BIOTECHNOLOGY TRAININGT32GM008359 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI SIAHAAN, TERUNA J., VOLKIN, DAVID · 1989 to 2018
$5.0M
Generating Native Env Glycosylation in HIV Vaccine CandidatesR01AI125093 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DESAIRE, HEATHER R · 2016 to 2019
$2.7M
Characterization of PTMs on Env to support HIV vaccine developmentR01AI094797 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DESAIRE, HEATHER R · 2012 to 2015
$1.4M
National Institute of Allergy and Infectious Diseases R01AI094797National Institute of Allergy and Infectious Diseases R01AI125093National Institute of General Medical Sciences T32-GM008359NIAID NIH HHS R01 AI094797NIAID NIH HHS R01 AI125093NIGMS NIH HHS T32 GM008359
6 · The paper itself

Abstract

Recombinantly expressed proteins are susceptible to oxidation during expression, purification, storage, and analysis; the residue most susceptible to oxidation is methionine. Methionine oxidation can be overestimated using current quantitative analysis methods because oxidation can occur during sample preparation, and researchers often do not use methods that account for this possibility. An experimental strategy had been developed previously to solve this problem through the use of an

Indexed as

Amino Acid SequenceAnimalsChromatography, High Pressure Liquidenv Gene Products, Human Immunodeficiency VirusHIV-1HIV InfectionsHumansImmunoglobulin GMass SpectrometryMethionineOxidation-ReductionProtein Processing, Post-TranslationalProteinsRibonucleasesenv Gene Products, Human Immunodeficiency VirusImmunoglobulin GMethionineProteinsribonuclease BRibonucleasesEnvHIVMass spectrometryMethionine oxidationPTMs post-translational modificationQuantitationStable isotope labeling

Identifiers

PMID29987661
PMCPMC6326892
OpenAlexW2844967533

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.