Evidence map›Paper›PMID 29987460›Full record

ReviewPediatric nephrology (Berlin, Germany)2019

Expert consensus guidelines for the genetic diagnosis of Alport syndrome.

Judy Savige, Francesca Ariani, Francesca Mari, Mirella Bruttini, Alessandra Renieri, Oliver Gross, Constantinos Deltas, Frances Flinter, Jie Ding, Daniel P Gale and 8 more

Open access · greenAbstract readReviewConsensus Statement
PubMed Publisher
In one paragraph

Review in Pediatric nephrology (Berlin, Germany), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 146 citations in OpenAlex.

  1. Trial
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  13. Treatment Approaches for Alport Syndrome.Journal of the American Society of Nephrology : JASN · 2026
    Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Pathological diagnosis of Alport syndrome.Kidney research and clinical practice · 2025
    Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 12 institutions in 8 countries.

Judy SavigeDepartment of Medicine, Melbourne and Northern Health, The University of Melbourne, Parkville, VIC, 3050, Australia. jasavige@unimelb.edu.au.
Francesca ArianiMedical Genetics, University of Siena, Siena, Italy.
Francesca MariMedical Genetics, University of Siena, Siena, Italy.
Mirella BruttiniMedical Genetics, University of Siena, Siena, Italy.
Alessandra RenieriMedical Genetics, University of Siena, Siena, Italy.
Oliver GrossClinic of Nephrology and Rheumatology, University of Gottingen, Gottingen, Germany.
Constantinos DeltasMolecular Medicine Research Centre, University of Cyprus, Nicosia, Cyprus.
Frances FlinterDepartment of Clinical Genetics, Guys' and St Thomas' NHS Foundation Trust, London, UK.
Jie DingPeking University First Hospital, Beijing, China.
Daniel P GaleCentre for Nephrology, Royal Free Hospital, University College London, London, UK.
Mato NagelCentre for Nephrology and Metabolic Disorders, Weisswasser, Germany.
Michael YauGenetics, Guy's Hospital, Viapath, London, UK.
Lev ShagamInstitute of Pediatrics, Pirogov Russian Medical University, Moscow, Russia.
Roser TorraInherited Kidney Disorders, Nephrology Department, Fundacio Puigvert, Instituto de Investigacion Carlos III, Universitat Autonoma de Barcelona, Barcelona, Spain.
Elisabet ArsMolecular Biology Laboratory, Fundacio Puigvert, Instituto de Investigacion Carlos III, Universitat Autonoma de Barcelona, Barcelona, Spain.
Julia HoefeleInstitute of Human Genetics, Technical University Munich, Munich, Germany.
Guido GarosiNephrology, Dialysis and Transplantation, Azienda Ospedaliera Universitaria Senese, Siena, Italy.
Helen StoreyGenetics, Guy's Hospital, Viapath, London, UK.
University of Siena · ITGuy's Hospital · GBUniversitat Autònoma de Barcelona · ESAzienda Ospedaliera Universitaria Senese · ITGuy's and St Thomas' NHS Foundation Trust · GBNorthern Health · AUPeking University · CNPirogov Russian National Research Medical University · RUTechnical University of Munich · DEUniversity College London · GBUniversity of Cyprus · CYUniversity of Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent expert guidelines recommend genetic testing for the diagnosis of Alport syndrome. Here, we describe current best practice and likely future developments. In individuals with suspected Alport syndrome, all three COL4A5, COL4A3 and COL4A4 genes should be examined for pathogenic variants, probably by high throughput-targeted next generation sequencing (NGS) technologies, with a customised panel for simultaneous testing of the three Alport genes. These techniques identify up to 95% of pathogenic COL4A variants. Where causative pathogenic variants cannot be demonstrated, the DNA should be examined for deletions or insertions by re-examining the NGS sequencing data or with multiplex ligation-dependent probe amplification (MLPA). These techniques identify a further 5% of variants, and the remaining few changes include deep intronic splicing variants or cases of somatic mosaicism. Where no pathogenic variants are found, the basis for the clinical diagnosis should be reviewed. Genes in which mutations produce similar clinical features to Alport syndrome (resulting in focal and segmental glomerulosclerosis, complement pathway disorders, MYH9-related disorders, etc.) should be examined. NGS approaches have identified novel combinations of pathogenic variants in Alport syndrome. Two variants, with one in COL4A3 and another in COL4A4, produce a more severe phenotype than an uncomplicated heterozygous change. NGS may also identify further coincidental pathogenic variants in genes for podocyte-expressed proteins that also modify the phenotype. Our understanding of the genetics of Alport syndrome is evolving rapidly, and both genetic and non-genetic factors are likely to contribute to the observed phenotypic variability.

Indexed as

Genetic TestingPractice Guidelines as TopicAutoantigensCollagen Type IVConsensusDNA Mutational AnalysisGenotypeHigh-Throughput Nucleotide SequencingHumansMutationNephritis, HereditaryPhenotypeAutoantigensCOL4A4 protein, humanCOL4A5 protein, humanCollagen Type IVtype IV collagen alpha3 chainAlport syndromeCollagen IV genesNext generation sequencingPathogenic variants

Identifiers

PMID29987460
OpenAlexW2827559089

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.