Evidence map›Paper›PMID 29986907›Full record

ArticleGenetics2018

Modulation of TORC2 Signaling by a Conserved Lkb1 Signaling Axis in Budding Yeast.

Maria Alcaide-Gavilán, Rafael Lucena, Katherine A Schubert, Karen L Artiles, Jessica Zapata, Douglas R Kellogg

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  4. Article
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  6. Inducible degradation-coupled phosphoproteomics identifies PP2AFrontiers in cell and developmental biology · 2024
    Article
  7. Review
  8. Article
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  11. Article
  12. Article
  13. Targeting mTOR for cancer therapy.Journal of hematology & oncology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Maria Alcaide-GavilánDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064.ORCID 0000-0001-9102-4857
Rafael LucenaDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064 rlucena@ucsc.edu dkellogg@ucsc.edu.ORCID 0000-0003-2050-0611
Katherine A SchubertDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064.ORCID 0000-0003-2676-8838
Karen L ArtilesDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064.ORCID 0000-0002-1674-064X
Jessica ZapataDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064.ORCID 0000-0001-9567-3539
Douglas R KelloggDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, California 95064 rlucena@ucsc.edu dkellogg@ucsc.edu.ORCID 0000-0002-5050-2194
University of California, Santa Cruz · US

Funding

UNIVERSITY OF CALIFORNIA, SANTA CRUZ IMSD PROGRAMR25GM058903 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI JURICA, MELISSA S · 1999 to 2019
$12.2M
Pathways that integrate cell growth with the cell cycleR01GM053959 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KELLOGG, DOUGLAS R. · 1996 to 2018
$5.9M
Control of Cell Growth and SizeR35GM131826 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Douglas R. Kellogg · 2019 to 2026
$3.9M
NIGMS NIH HHS R01 GM053959NIGMS NIH HHS R25 GM058903NIGMS NIH HHS R35 GM131826
6 · The paper itself

Abstract

Nutrient availability, growth rate, and cell size are closely linked. For example, in budding yeast, the rate of cell growth is proportional to nutrient availability, cell size is proportional to growth rate, and growth rate is proportional to cell size. Thus, cells grow slowly in poor nutrients and are nearly half the size of cells growing in rich nutrients. Moreover, large cells grow faster than small cells. A signaling network that surrounds TOR kinase complex 2 (TORC2) plays an important role in enforcing these proportional relationships. Cells that lack components of the TORC2 network fail to modulate their growth rate or size in response to changes in nutrient availability. Here, we show that budding yeast homologs of the Lkb1 tumor suppressor kinase are required for normal modulation of TORC2 signaling in response to changes in carbon source. Lkb1 kinases activate Snf1/AMPK to initiate transcription of genes required for utilization of poor carbon sources. However, Lkb1 influences TORC2 signaling via a novel pathway that is independent of Snf1/AMPK. Of the three Lkb1 homologs in budding yeast, Elm1 plays the most important role in modulating TORC2. Elm1 activates a pair of related kinases called Gin4 and Hsl1. Previous work found that loss of Gin4 and Hsl1 causes cells to undergo unrestrained growth during a prolonged mitotic arrest, which suggests that they play a role in linking cell cycle progression to cell growth. We found that Gin4 and Hsl1 also control the TORC2 network. In addition, Gin4 and Hsl1 are themselves influenced by signals from the TORC2 network, consistent with previous work showing that the TORC2 network constitutes a feedback loop. Together, the data suggest a model in which the TORC2 network sets growth rate in response to carbon source, while also relaying signals via Gin4 and Hsl1 that set the critical amount of growth required for cell cycle progression. This kind of close linkage between control of cell growth and size would suggest a simple mechanistic explanation for the proportional relationship between cell size and growth rate.

Indexed as

Caenorhabditis elegans ProteinsCell CycleCell Cycle ProteinsCell EnlargementCell ProliferationCyclin-Dependent KinasesMechanistic Target of Rapamycin Complex 2PhosphorylationProtein KinasesProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaccharomycetalesSignal TransductionCaenorhabditis elegans ProteinsCell Cycle ProteinsCyclin-Dependent KinasesGIN4 protein, S cerevisiaeHSL1 protein, S cerevisiaeMechanistic Target of Rapamycin Complex 2PAR-3 protein, C elegansProtein KinasesProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsCell GrowthCell SizeLkb1NutrientsRts1TORC2

Identifiers

PMID29986907
PMCPMC6116957
OpenAlexW2881317771

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.