Evidence map›Paper›PMID 29986648›Full record

ArticleBMC genomics2018

Generation of Mycoplasma hominis gene-targeted mutants by targeting-induced local lesions in genomes (TILLING).

S Pereyre, C Bénard, C Brès, C Le Roy, J P Mauxion, F Rideau, P Sirand-Pugnet, B Henrich, C Bébéar

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Improved transformation efficiency inMicrobiology spectrum · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

S PereyreUSC-EA 3671 Mycoplasmal and Chlamydial Infections in Humans, University of Bordeaux, Campus Bordeaux Carreire, 146 rue Léo Saignat, 33076, Bordeaux Cedex, France. sabine.pereyre@u-bordeaux.fr.ORCID http://orcid.org/0000-0003-1757-4206
C BénardUSC-EA 3671 Mycoplasmal and Chlamydial Infections in Humans, University of Bordeaux, Campus Bordeaux Carreire, 146 rue Léo Saignat, 33076, Bordeaux Cedex, France.
C BrèsUMR 1332 BFP, INRA, Univ. Bordeaux, F-33140, Villenave d'Ornon, France.
C Le RoyUSC-EA 3671 Mycoplasmal and Chlamydial Infections in Humans, University of Bordeaux, Campus Bordeaux Carreire, 146 rue Léo Saignat, 33076, Bordeaux Cedex, France.
J P MauxionUMR 1332 BFP, INRA, Univ. Bordeaux, F-33140, Villenave d'Ornon, France.
F RideauUSC-EA 3671 Mycoplasmal and Chlamydial Infections in Humans, University of Bordeaux, Campus Bordeaux Carreire, 146 rue Léo Saignat, 33076, Bordeaux Cedex, France.
P Sirand-PugnetUMR 1332 BFP, INRA, Univ. Bordeaux, F-33140, Villenave d'Ornon, France.
B HenrichInstitute of Medical Microbiology and Hospital Hygiene, Medical Faculty of the Heinrich-Heine-University Duesseldorf, Düsseldorf, Germany.
C BébéarUSC-EA 3671 Mycoplasmal and Chlamydial Infections in Humans, University of Bordeaux, Campus Bordeaux Carreire, 146 rue Léo Saignat, 33076, Bordeaux Cedex, France.
Université de Bordeaux · FRCEA CESTA · FRHeinrich Heine University Düsseldorf · DE

Funding

Conseil Régional d'Aquitaine 20030304002FAConseil Régional d'Aquitaine 20040305003FAEuropean Union FEDER 2003227Investissements d'Avenir ANR-10-EQPX-16-01
6 · The paper itself

Abstract

backgroundMycoplasma hominis is a human urogenital pathogen involved in gynaecological, neonatal and extra-genital infections. However, no versatile genetic tools are currently available to study the pathogenicity of this bacterium. Targeting-Induced Local Lesions IN Genomes (TILLING) is a reverse-genetic method that combines point mutations induced by chemical mutagenesis with a DNA screening technique. We used ethyl methanesulfonate (EMS) that introduces C-G to T-A transition mutations to generate a library of M. hominis mutants. As a proof of concept, mutagenized organisms were screened for mutations in two target genes previously associated with the mycoplasma pathogenicity, the vaa gene encoding an adhesin lipoprotein and the oppA gene encoding the main ectoATPase of the bacterium. The resulting mutants were evaluated using functional assays, an adhesion to HeLa cell assay for vaa-mutants and an ATPase activity test for oppA-mutants.

resultsA 1200-clone library was generated by exposing M. hominis PG21 to 9 mg/mL EMS for 3 h. To identify mutants of interest, targeted gene fragments were amplified, heat-denatured, slowly reannealed and digested with the mismatch-specific endonuclease ENDO1. If multiple alleles were present in the PCR amplicons, these alleles formed heteroduplexes during reannealing that were specifically cleaved by ENDO1 at mismatching positions. A total of four vaa-mutants and two oppA-mutants harbouring missense mutations were obtained and fully sequenced. Zero to eight additional mutations were identified in the genomes of each mutant. The vaa-mutants were tested for adhesion to immobilized HeLa cells but their adhesion was not significantly different from the adhesion of M. hominis PG21. One of the two oppA-mutants that were tested for ATPase activity presented a higher affinity for its ATP substrate than the parental strain.

conclusionFor the first time, we demonstrated that M. hominis gene-targeted mutants could be successfully obtained using this TILLING strategy. In the absence of robust genetic tools for studying M. hominis, the TILLING strategy that can target any gene of the genome could help to elucidate gene functions and to better understand the pathogenesis of this human pathogenic species.

Indexed as

Adenosine TriphosphatasesAdhesins, BacterialBacterial ProteinsBase Pair MismatchCarrier ProteinsEthyl MethanesulfonateGene LibraryGene TargetingHeLa CellsHumansLipoproteinsMycoplasma hominisPoint MutationAdenosine TriphosphatasesAdhesins, BacterialBacterial ProteinsCarrier ProteinsectoATPaseEthyl MethanesulfonateLipoproteinsoligopeptide-binding protein, bacteriaVaa protein, Mycoplasma hominisChemical mutagenesisEthyl methanesulfonateMycoplasma hominisTILLING

Identifiers

PMID29986648
PMCPMC6038183
OpenAlexW2812555731

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.