Evidence map›Paper›PMID 29986538›Full record

ReviewMolecules (Basel, Switzerland)2018

Recent Development of Genetic Code Expansion for Posttranslational Modification Studies.

Hao Chen, Sumana Venkat, Paige McGuire, Qinglei Gan, Chenguang Fan

Abstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. "Not-so-popular" orthogonal pairs in genetic code expansion.Protein science : a publication of the Protein Society · 2023
    Review
  7. Engineering enzyme activity using an expanded amino acid alphabet.Protein engineering, design & selection : PEDS · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Writing and erasing O-GlcNAc from target proteins in cells.Biochemical Society transactions · 2021
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Acetylation at Lysine 86 ofFrontiers in microbiology · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hao ChenCell and Molecular Biology Program, University of Arkansas, Fayetteville, AR 72701, USA. hc019@uark.edu.
Sumana VenkatCell and Molecular Biology Program, University of Arkansas, Fayetteville, AR 72701, USA. sv009@uark.edu.
Paige McGuireDepartment of Biological Sciences, University of Arkansas, Fayetteville, AR 72701, USA. plmcguir@uark.edu.
Qinglei GanDepartment of Chemistry and Biochemistry, University of Arkansas, Fayetteville, AR 72701, USA. qingleig@uark.edu.
Chenguang FanCell and Molecular Biology Program, University of Arkansas, Fayetteville, AR 72701, USA. cf021@uark.edu.ORCID 0000-0003-0662-1185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nowadays advanced mass spectrometry techniques make the identification of protein posttranslational modifications (PTMs) much easier than ever before. A series of proteomic studies have demonstrated that large numbers of proteins in cells are modified by phosphorylation, acetylation and many other types of PTMs. However, only limited studies have been performed to validate or characterize those identified modification targets, mostly because PTMs are very dynamic, undergoing large changes in different growth stages or conditions. To overcome this issue, the genetic code expansion strategy has been introduced into PTM studies to genetically incorporate modified amino acids directly into desired positions of target proteins. Without using modifying enzymes, the genetic code expansion strategy could generate homogeneously modified proteins, thus providing powerful tools for PTM studies. In this review, we summarized recent development of genetic code expansion in PTM studies for research groups in this field.

Indexed as

Genetic CodeAcetylationAnimalsHumansMass SpectrometryPhosphorylationProtein Processing, Post-TranslationalProteinsProteomicsProteinsgenetic code expansionnoncanonical amino acidposttranslational modificationprotein acetylationprotein methylationprotein oxidationprotein phosphorylationunnatural amino acid

Identifiers

PMID29986538
PMCPMC6100177

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.