Evidence map›Paper›PMID 29986093›Full record

ArticleThe Journal of infectious diseases2018

High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis.

Daniel P Depledge, Juliana Cudini, Samit Kundu, Claire Atkinson, Julianne R Brown, Tanzina Haque, Charlotte J Houldcroft, Evelyn S Koay, Fiona McGill, Richard Milne and 8 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 35 citations in OpenAlex.

  1. Varicella zoster virus and the central nervous system.Nature reviews. Microbiology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Varicella-Zoster Virus-Genetics, Molecular Evolution and Recombination.Current topics in microbiology and immunology · 2023
    Article
  9. Article
  10. Human herpesvirus diversity is altered in HLA class I binding peptides.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Article
  13. Review
  14. Alphaherpesvirus Genomics: Past, Present and Future.Current issues in molecular biology · 2021
    Review
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 4 countries.

Daniel P DepledgeDivision of Infection and Immunity, University College London.
Juliana CudiniDivision of Infection and Immunity, University College London.
Samit KunduSchool of Human and Life Sciences, Canterbury Christ Church University, University of Kent.
Claire AtkinsonDepartment of Virology, Royal Free Hospital, London.
Julianne R BrownMicrobiology, Virology and Infection Prevention and Control, Great Ormond Street Hospital NHS Foundation Trust, London.
Tanzina HaqueDepartment of Virology, Royal Free Hospital, London.
Charlotte J HouldcroftDivision of Infection and Immunity, University College London.
Evelyn S KoayDepartment of Pathology, National University of Singapore.
Fiona McGillInstitute of Infection and Global Health, University of Liverpool.
Richard MilneDivision of Infection and Immunity, University College London.
Tom WhitfieldInstitute of Infection and Global Health, University of Liverpool.
Julian W TangClinical Microbiology, University Hospitals of Leicester NHS Trust.
Gillian UnderhillDepartments of Clinical Microbiology, Pathology Centre, Queen Alexandra Hospital, Portsmouth.
Tomas BergstromDepartment of Infectious Diseases, Section for Clinical Virology, Institute of Biomedicine, University of Gothenburg, Sweden.
Peter NorbergDepartment of Infectious Diseases, Section for Clinical Virology, Institute of Biomedicine, University of Gothenburg, Sweden.
Richard GoldsteinDivision of Infection and Immunity, University College London.
Tom SolomonWalton Centre NHS Foundation Trust, Liverpool, United Kingdom.
Judith BreuerDivision of Infection and Immunity, University College London.
Institute of Infection and Immunity · CAUniversity of Gothenburg · SEUniversity College London · GBUniversity of Liverpool · GBCanterbury Christ Church University · GBGreat Ormond Street Hospital for Children NHS Foundation Trust · GBNational University Hospital · SGQueen Alexandra Hospital · GBThe Royal Free Hospital · GBWalton Centre · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P007562/1Department of Health 12/205/28Department of Health DRF-2013-06-168Department of Health IS-HPU-1112-10117Department of Health RP-PG-0108-10048Medical Research Council G0700814Medical Research Council G0900950
6 · The paper itself

Abstract

Background: Varicella zoster virus (VZV) may cause encephalitis, both with and without rash. Here we investigate whether viruses recovered from the central nervous system (CNS; encephalitis or meningitis) differ genetically from those recovered from non-CNS samples. Methods: Enrichment-based deep sequencing of 45 VZV genomes from cerebral spinal fluid (CSF), plasma, bronchoalveolar lavage (BAL), and vesicles was carried out with samples collected from 34 patients with and without VZV infection of the CNS. Results: Viral sequences from multiple sites in the same patient were identical at the consensus level. Virus from vesicle fluid and CSF in cases of meningitis showed low-level diversity. By contrast, plasma, BAL, and encephalitis had higher numbers of variant alleles. Two CSF-encephalitis samples had high genetic diversity, with variant frequency patterns typical of mixed infections with different clades. Conclusions: Low viral genetic diversity in vesicle fluid is compatible with previous observations that VZV skin lesions arise from single or low numbers of virions. A similar result was observed in VZV from cases of VZV meningitis, a generally self-limiting infection. CSF from cases of encephalitis had higher diversity with evidence for mixed clade infections in 2 cases. We hypothesize that reactivation from multiple neurons may contribute to the pathogenesis of VZV encephalitis.

Indexed as

AdultAgedAged, 80 and overChildChild, PreschoolCohort StudiesCoinfectionCytoplasmic VesiclesDNA, ViralEncephalitis, Varicella ZosterGenetic VariationGenome, ViralHerpesvirus 3, HumanHumansMiddle AgedViral LoadDNA, Viral

Identifiers

PMID29986093
PMCPMC6173578
OpenAlexW2829934783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.