Evidence map›Paper›PMID 29986055›Full record

ArticleNucleic acids research2018

Histone variant H2A.Z deposition and acetylation directs the canonical Notch signaling response.

Benedetto Daniele Giaimo, Francesca Ferrante, Diana M Vallejo, Kerstin Hein, Irene Gutierrez-Perez, Andrea Nist, Thorsten Stiewe, Gerhard Mittler, Susanne Herold, Tobias Zimmermann and 5 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Set1 promotes Notch-induced transcriptional activation.Cellular and molecular life sciences : CMLS · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Benedetto Daniele GiaimoInstitute of Biochemistry, University of Giessen, Friedrichstrasse 24, 35392 Giessen, Germany.
Francesca FerranteInstitute of Biochemistry, University of Giessen, Friedrichstrasse 24, 35392 Giessen, Germany.
Diana M VallejoInstituto de Neurociencias, Consejo Superior de Investigaciones Cientificas and Universidad Miguel Hernández, Campus de Sant Joan, Apartado 18, 03550 Sant Joan, Alicante, Spain.
Kerstin HeinInstitute of Biochemistry, University of Giessen, Friedrichstrasse 24, 35392 Giessen, Germany.
Irene Gutierrez-PerezInstituto de Neurociencias, Consejo Superior de Investigaciones Cientificas and Universidad Miguel Hernández, Campus de Sant Joan, Apartado 18, 03550 Sant Joan, Alicante, Spain.
Andrea NistGenomics Core Facility, Institute of Molecular Oncology, Philipps-University, Hans-Meerwein-Str. 3, 35043 Marburg, Germany.
Thorsten StieweGenomics Core Facility, Institute of Molecular Oncology, Philipps-University, Hans-Meerwein-Str. 3, 35043 Marburg, Germany.
Gerhard MittlerMax-Planck-Institute of Immunobiology and Epigenetics, Stübeweg 51, 79108 Freiburg, Germany.
Susanne HeroldDepartment of Internal Medicine II, Universities Giessen & Marburg Lung Center (UGMLC), member of the German Center for Lung Research (DZL), Giessen, Germany.
Tobias ZimmermannBioinformatics and Systems Biology, University of Giessen, Heinrich-Buff-Ring 58-62, 35392 Giessen, Germany.
Marek BartkuhnInstitute for Genetics, University of Giessen, Heinrich-Buff-Ring 58-62, 35392 Giessen, Germany.
Peggy SchwarzUniversity Medical Center Ulm, Center for Internal Medicine, Department of Internal Medicine I, Albert-Einstein-Allee 23, 89081 Ulm, Germany.
Franz OswaldUniversity Medical Center Ulm, Center for Internal Medicine, Department of Internal Medicine I, Albert-Einstein-Allee 23, 89081 Ulm, Germany.
Maria DominguezInstituto de Neurociencias, Consejo Superior de Investigaciones Cientificas and Universidad Miguel Hernández, Campus de Sant Joan, Apartado 18, 03550 Sant Joan, Alicante, Spain.
Tilman BorggrefeInstitute of Biochemistry, University of Giessen, Friedrichstrasse 24, 35392 Giessen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A fundamental as yet incompletely understood feature of Notch signal transduction is a transcriptional shift from repression to activation that depends on chromatin regulation mediated by transcription factor RBP-J and associated cofactors. Incorporation of histone variants alter the functional properties of chromatin and are implicated in the regulation of gene expression. Here, we show that depletion of histone variant H2A.Z leads to upregulation of canonical Notch target genes and that the H2A.Z-chaperone TRRAP/p400/Tip60 complex physically associates with RBP-J at Notch-dependent enhancers. When targeted to RBP-J-bound enhancers, the acetyltransferase Tip60 acetylates H2A.Z and upregulates Notch target gene expression. Importantly, the Drosophila homologs of Tip60, p400 and H2A.Z modulate Notch signaling response and growth in vivo. Together, our data reveal that loading and acetylation of H2A.Z are required to assure tight control of canonical Notch activation.

Indexed as

Gene Expression RegulationAcetylationAdaptor Proteins, Signal TransducingAdenosine TriphosphatasesAnimalsCell LineCell Line, TumorHEK293 CellsHeLa CellsHistonesHumansImmunoglobulin J Recombination Signal Sequence-Binding ProteinLysine Acetyltransferase 5Mice, KnockoutNuclear ProteinsReceptors, NotchAdaptor Proteins, Signal TransducingAdenosine Triphosphataseshistone H2A.F-ZHistonesImmunoglobulin J Recombination Signal Sequence-Binding ProteinKAT5 protein, humanLysine Acetyltransferase 5Nuclear ProteinsRBPJ protein, humanReceptors, NotchSRCAP protein, humantransformation-transcription domain-associated protein

Identifiers

PMID29986055
PMCPMC6144792

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.