Evidence map›Paper›PMID 29985464›Full record

ArticleScientific reports2018

Helix α-3 inter-molecular salt bridges and conformational changes are essential for toxicity of Bacillus thuringiensis 3D-Cry toxin family.

Sabino Pacheco, Isabel Gómez, Jorge Sánchez, Blanca-Ines García-Gómez, Daniel M Czajkowsky, Jie Zhang, Mario Soberón, Alejandra Bravo

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Channel Formation in Cry Toxins: An Alphafold-2 Perspective.International journal of molecular sciences · 2023
    Article
  2. Review
  3. Genetic Modification Approaches for ParasporinsMolecules (Basel, Switzerland) · 2021
    Review
  4. Article
  5. Whole Genome Sequencing Analysis ofFrontiers in microbiology · 2021
    Article
  6. Article
  7. Article
  8. Frontiers in microbiology · 2020
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Sabino PachecoInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico.
Isabel GómezInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico.ORCID 0000-0001-7293-0520
Jorge SánchezInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico.
Blanca-Ines García-GómezInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico.
Daniel M CzajkowskyBio-ID Center, School of Biomedical Engineering, Shanghai, 200240, China.
Jie ZhangState Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, P. R. China.
Mario SoberónInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico.
Alejandra BravoInstituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, Cuernavaca, 62250, Morelos, Mexico. bravo@ibt.unam.mx.ORCID 0000-0002-7573-7475
Universidad Nacional Autónoma de México · MXInstitute of Plant Protection · CNShanghai Center For Bioinformation Technology · CN

Funding

Consejo Nacional de Ciencia y Tecnología (National Council of Science and Technology, Mexico) Fronteras 008Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México (Dirección General Asuntos del Personal Académico, Universidad Nacional Autónoma de México) IA201218Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México (Dirección General Asuntos del Personal Académico, Universidad Nacional Autónoma de México) IN201016National Natural Science Foundation of China (National Science Foundation of China) 11374207National Natural Science Foundation of China (National Science Foundation of China) 31370750National Natural Science Foundation of China (National Science Foundation of China) 31670722Shanghai Jiao Tong University (SJTU) 16X120030015
6 · The paper itself

Abstract

Bacillus thuringiensis insecticidal Cry toxins break down larval midgut-cells after forming pores. The 3D-structures of Cry4Ba and Cry5Ba revealed a trimeric-oligomer after cleavage of helices α-1 and α-2a, where helix α-3 is extended and made contacts with adjacent monomers. Molecular dynamic simulations of Cry1Ab-oligomer model based on Cry4Ba-coordinates showed that E101 forms a salt-bridge with R99 from neighbor monomer. An additional salt bridge was identified in the trimeric-Cry5Ba, located at the extended helix α-3 in the region corresponding to the α-2b and α-3 loop. Both salt-bridges were analyzed by site directed mutagenesis. Single-point mutations in the Lepidoptera-specific Cry1Ab and Cry1Fa toxins were affected in toxicity, while reversed double-point mutant partially recovered the phenotype, consistent with a critical role of these salt-bridges. The single-point mutations in the salt-bridge at the extended helix α-3 of the nematicidal Cry5Ba were also non-toxic. The incorporation of this additional salt bridge into the nontoxic Cry1Ab-R99E mutant partially restored oligomerization and toxicity, supporting that the loop between α-2b and α-3 forms part of an extended helix α-3 upon oligomerization of Cry1 toxins. Overall, these results highlight the role in toxicity of salt-bridge formation between helices α-3 of adjacent monomers supporting a conformational change in helix α-3.

Indexed as

Amino Acid SequenceBacillus thuringiensisBacillus thuringiensis ToxinsBacterial ProteinsCrystallography, X-RayEndotoxinsHemolysin ProteinsMolecular Dynamics SimulationMutagenesis, Site-DirectedProtein Conformation, alpha-HelicalProtein MultimerizationSequence AlignmentBacillus thuringiensis ToxinsBacterial ProteinsEndotoxinsHemolysin Proteinsinsecticidal crystal protein, Bacillus Thuringiensis

Identifiers

PMID29985464
PMCPMC6037675
OpenAlexW2810112711

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.