Evidence map›Paper›PMID 29985386›Full record

ArticleScientific reports2018

Evolutionary and expression analysis of CAMTA gene family in Nicotiana tabacum yielded insights into their origin, expansion and stress responses.

Kaleem U Kakar, Zarqa Nawaz, Zhouqi Cui, Peijian Cao, Jingjing Jin, Qingyao Shu, Xueliang Ren

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
8.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

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  9. Identification of CAMTA Gene Family inPlants (Basel, Switzerland) · 2022
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  12. Systematic Analysis and Identification of Drought-Responsive Genes of theInternational journal of molecular sciences · 2022
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  13. Article
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  15. Identification and Expression Analysis ofFrontiers in plant science · 2022
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  16. Article
  17. Article
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  20. CaFrontiers in plant science · 2020
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Kaleem U KakarMolecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang, 550081, China.
Zarqa NawazMolecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang, 550081, China.
Zhouqi CuiDepartment of Plant Pathology and Ecology, The Connecticut Agricultural Experimental Station, New haven, CT, 06511, USA.
Peijian CaoChina Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.ORCID http://orcid.org/0000-0001-9991-423X
Jingjing JinChina Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute of CNTC, Zhengzhou, 450001, China.
Qingyao ShuState Key Laboratory of Rice Biology, Institution of Crop Science, Zhejiang University, Hangzhou, 310058, China.ORCID http://orcid.org/0000-0002-9201-0593
Xueliang RenMolecular Genetics Key Laboratory of China Tobacco, Guizhou Academy of Tobacco Science, Guiyang, 550081, China. renxuel@126.com.
China Tobacco · CNBalochistan University of Information Technology, Engineering and Management Sciences · PKChina National Rice Research Institute · CNConnecticut Agricultural Experiment Station · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calmodulin-binding transcription activators (CAMTAs) represent the novel gene family of transcriptional regulators, which play important biological functions. Though, the first ever plant CAMTA gene was evidenced in Nicotiana tabacum in 2002. But, the systematic identification, origin and function of this gene family has not been performed due to the lack of reference genome information until now. Here, we identified 29 CAMTA genes in four Nicotiana species, including thirteen NtabCAMTAs, six NsylCAMTAs, and five NtomCAMTAs and NbenCAMTAs. These CAMTA families were classified into five phylogenetic groups (I-V), among which, the group-IV CAMTAs probably emerged the earliest. The NtabCAMTA family genes have diverse structures, and are randomly localized on five chromosomes and scaffolds. N. tabacum acquired 11 copies of homolog CAMATA genes from the parental genomes of N. tomentosiformis and N. sylvestris, followed by expansion through polyploidization and duplication. The NtabCAMTA genes were differentially expressed in different plant parts, and showed sensitivity towards different abiotic and biotic stresses. Co-expression network analysis revealed that some NtabCAMTA subunits interact with each other, and co-expressed. The current study is the first report presenting a comprehensive overview of Nicotiana CAMTA families, and opens a new avenue for the improvement of the cultivated tobacco.

Indexed as

Amino Acid MotifsEvolution, MolecularGene Expression Regulation, PlantGenome, PlantMicroRNAsNicotianaPhylogenyPlant LeavesPlant ProteinsPlant RootsStress, PhysiologicalTranscription FactorsMicroRNAsPlant ProteinsTranscription Factors

Identifiers

PMID29985386
PMCPMC6037683
OpenAlexW2810157501

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.