Evidence map›Paper›PMID 29983274›Full record

ArticleCell chemical biology2018

A Quantitative Chemoproteomic Platform to Monitor Selenocysteine Reactivity within a Complex Proteome.

Daniel W Bak, Jinjun Gao, Chu Wang, Eranthie Weerapana

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Thioredoxin Domain Containing 5 (TXNDC5): Friend or Foe?Current issues in molecular biology · 2024
    Review
  6. Review
  7. Review
  8. Article
  9. Selenium in Peptide Chemistry.Molecules (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Facultative protein selenation regulates redox sensitivity, adipose tissue thermogenesis, and obesity.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Daniel W BakDepartment of Chemistry, Boston College, Chestnut Hill, MA 02467, USA. Electronic address: bakd@bc.edu.
Jinjun GaoPeking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.
Chu WangPeking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China; College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.
Eranthie WeerapanaDepartment of Chemistry, Boston College, Chestnut Hill, MA 02467, USA. Electronic address: eranthie@bc.edu.
Boston College · USPeking University · CN

Funding

Investigating cysteine PTMs in living cellsR01GM117004 · NIGMS · BOSTON COLLEGE · PI WEERAPANA, ERANTHIE · 2016 to 2019
$1.2M
NIGMS NIH HHS R01 GM117004
6 · The paper itself

Abstract

Mammalian selenocysteine (Sec)-containing proteins, selenoproteins, are important to (patho)physiological processes, including redox homeostasis. Sec residues have been recalcitrant to mass spectrometry-based chemoproteomic methods that enrich for reactive cysteine (Cys) residues with electrophilic chemical probes, despite confirmed reactivity of Sec with these electrophiles. Highly abundant Cys peptides likely suppress low-abundant Sec peptides. By exploiting the decreased pK

Indexed as

Amino Acid SequenceAnimalsHydrogen-Ion ConcentrationMaleMass SpectrometryMiceMice, Inbred C57BLPeptidesProteomeProteomicsRAW 264.7 CellsSelenocysteineSelenoproteinsPeptidesProteomeSelenocysteineSelenoproteinschemoproteomicscysteineisoTOP-ABPPselenocysteineselenoprotein

Identifiers

PMID29983274
PMCPMC6510024
OpenAlexW2826128847

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.