Evidence map›Paper›PMID 29982500›Full record

ArticleThe Journal of infectious diseases2018

Effects of Substance Use and Sex Practices on the Intestinal Microbiome During HIV-1 Infection.

Jennifer A Fulcher, Shehnaz K Hussain, Ryan Cook, Fan Li, Nicole H Tobin, Amy Ragsdale, Steven Shoptaw, Pamina M Gorbach, Grace M Aldrovandi

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it, 55 citations in OpenAlex.

  1. The Impact of Human Immunodeficiency Virus Infection on Gut Microbiota α-Diversity: An Individual-level Meta-analysis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Science signaling · 2025
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. The Microbiome and Mental Health Across the Lifespan.Current topics in behavioral neurosciences · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Social Genomics of Methamphetamine Use, HIV Viral Load, and Social Adversity.Annals of behavioral medicine : a publication of the Society of Behavioral Medicine · 2022
    Article
  18. Article
  19. Review
  20. Association between CD4BMC infectious diseases · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Jennifer A FulcherDivision of Infectious Diseases, Department of Medicine, University of California, Los Angeles, California.
Shehnaz K HussainDepartment of Medicine, Cedars-Sinai Medical Center, University of California, Los Angeles, California.
Ryan CookDepartment of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, California.
Fan LiDivision of Infectious Diseases, Department of Pediatrics, University of California, Los Angeles, California.
Nicole H TobinDivision of Infectious Diseases, Department of Pediatrics, University of California, Los Angeles, California.
Amy RagsdaleDepartment of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, California.
Steven ShoptawDepartment of Family Medicine, David Geffen School of Medicine at UCLA, University of California, Los Angeles, California.
Pamina M GorbachDivision of Infectious Diseases, Department of Medicine, University of California, Los Angeles, California.
Grace M AldrovandiDivision of Infectious Diseases, Department of Pediatrics, University of California, Los Angeles, California.
University of California, Los Angeles · USCedars-Sinai Medical Center · US

Funding

UCLA Rapid, Relevant, Rigorous Implementation Science HubP30MH058107 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI RAPHAEL J LANDOVITZ · 1997 to 2026
$53.5M
Virology CoreP30AI028697 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZACK, JEROME A. · 1991 to 2018
$39.9M
MSM and Substances Cohort at UCLA Linking Infections Noting Effects (MASCULINE) U01DA036267 · NIDA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GORBACH, PAMINA MAE, SHOPTAW, STEVEN J · 2013 to 2024
$20.5M
The Effect of Nanoparticle Encapsulated Resveratrol on Treatment of PeriodontitisKL2TR001882 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Elizabeta Nemeth · 2016 to 2026
$13.1M
Microbiome and Mucosal Immune Interactions in the Pathogenesis of HIV-1 TransmissionK08AI124979 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FULCHER, JENNIFER · 2018 to 2021
$617k
NCATS NIH HHS KL2 TR001882NIAID NIH HHS K08 AI124979NIAID NIH HHS P30 AI028697NIDA NIH HHS U01 DA036267NIMH NIH HHS P30 MH058107
6 · The paper itself

Abstract

Background: Human immunodeficiency virus type 1 (HIV-1) infection alters the human intestinal microbiome; however, behavioral factors driving these changes remain poorly defined. Here we examine the effects of substance use and sex behavior on the microbiome during HIV-1 infection. Methods: Archival rectal swab specimens, urine drug test results, and responses to substance use and sex behavior questionnaires were obtained from 37 HIV-positive participants at 2 time points, separated by 6 months, in a cohort examining the effects of substance use in men who have sex with men (MSM). Microbiome profiling was performed using 16S ribosomal RNA gene sequencing, and associations with behavioral factors were examined using 0-inflated negative binomial regression. Further analysis of selected variables of interest was performed using propensity scores to account for multiple confounders. Results: Using permutational multivariate analysis of variance, we found that receptive anal intercourse, methamphetamine use, and marijuana use were among the most important drivers of microbiome variation. Propensity score-adjusted analyses revealed that methamphetamine use and marijuana use displayed unique associations; methamphetamine use was associated with an increased abundance of Porphyromonas and Granulicatella organisms and a decreased abundance of Ruminococcus, Collinsella, and Parabacteroides organisms, whereas marijuana use was associated with an increased abundance of Ruminococcus, Clostridium cluster IV, Solobacterium, and Fusobacterium organisms and a decreased abundance of Acidaminococcus, Prevotella, Dialister, Anaerostipes, and Dorea organisms. Conclusions: Drug use and sex behavior are important factors associated with intestinal dysbiosis during chronic HIV-1 infection among young MSM.

Indexed as

AdultCluster AnalysisGastrointestinal MicrobiomeHIV InfectionsHomosexuality, MaleHost-Pathogen InteractionsHumansMaleRetrospective StudiesSexual BehaviorSubstance-Related Disorders

Identifiers

PMID29982500
PMCPMC6692862
OpenAlexW2811179132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.