Evidence map›Paper›PMID 29982236›Full record

ArticleJournal of integrative bioinformatics2018

Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data.

Mikael Trellet, Nicolas Férey, Jakub Flotyński, Marc Baaden, Patrick Bourdot

Abstract read
In one paragraph

Article in Journal of integrative bioinformatics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. From Virtual Reality to Immersive Analytics in Bioinformatics.Journal of integrative bioinformatics · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mikael TrelletFaculty of Science, Chemistry, Computational Structural Biology group, Bijvoet Center for Biomolecular Research, Padualaan 9, 3584CH Utrecht, Netherlands.ORCID http://orcid.org/0000-0001-6337-581X
Nicolas FéreyVENISE Group, LIMSI, CNRS, Université Paris Sud, Orsay, France.
Jakub FlotyńskiPoznań Univ. of Economics and Business, Poznań, Poland.
Marc BaadenLaboratoire de Biochimie Théorique, CNRS, UPR9080, Institut de Biologie Physico-Chimique, Univ Paris Diderot, Sorbonne Paris Cité, PSL Research University, Paris, France.
Patrick BourdotVENISE Group, LIMSI, CNRS, Université Paris Sud, Orsay, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The advances made in recent years in the field of structural biology significantly increased the throughput and complexity of data that scientists have to deal with. Combining and analyzing such heterogeneous amounts of data became a crucial time consumer in the daily tasks of scientists. However, only few efforts have been made to offer scientists an alternative to the standard compartmentalized tools they use to explore their data and that involve a regular back and forth between them. We propose here an integrated pipeline especially designed for immersive environments, promoting direct interactions on semantically linked 2D and 3D heterogeneous data, displayed in a common working space. The creation of a semantic definition describing the content and the context of a molecular scene leads to the creation of an intelligent system where data are (1) combined through pre-existing or inferred links present in our hierarchical definition of the concepts, (2) enriched with suitable and adaptive analyses proposed to the user with respect to the current task and (3) interactively presented in a unique working environment to be explored.

Indexed as

Computer GraphicsSemanticsSoftwareHumansImaging, Three-DimensionalModels, StructuralStatistics as TopicUser-Computer InterfaceSemantics for InteractionStructural BiologyVirtual Reality

Identifiers

PMID29982236
PMCPMC6167042

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.