Evidence map›Paper›PMID 29980679›Full record

ArticleNature communications2018

ETS transcription factors induce a unique UV damage signature that drives recurrent mutagenesis in melanoma.

Peng Mao, Alexander J Brown, Shingo Esaki, Svetlana Lockwood, Gregory M K Poon, Michael J Smerdon, Steven A Roberts, John J Wyrick

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 139 citations in OpenAlex.

  1. Article
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  8. Topographical archetypes of somatic mutagenesis in cancer.bioRxiv : the preprint server for biology · 2026
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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Peng MaoSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, USA.
Alexander J BrownSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, USA.
Shingo EsakiDepartment of Chemistry, Georgia State University, Atlanta, GA, 30303, USA.
Svetlana LockwoodPaul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, 99164, USA.ORCID http://orcid.org/0000-0002-9401-239X
Gregory M K PoonDepartment of Chemistry, Georgia State University, Atlanta, GA, 30303, USA.ORCID http://orcid.org/0000-0001-5107-9458
Michael J SmerdonSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, USA.
Steven A RobertsSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, USA. sroberts@vetmed.wsu.edu.
John J WyrickSchool of Molecular Biosciences, Washington State University, Pullman, WA, 99164, USA. jwyrick@vetmed.wsu.edu.ORCID http://orcid.org/0000-0002-7911-3803
Washington State University · USGeorgia State University · US

Funding

TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Infectious Diseases and Microbial Immunology Training ProgramT32AI007025 · NIAID · WASHINGTON STATE UNIVERSITY · PI Thomas H KAWULA, M KARIUKI NJENGA · 1985 to 2026
$7.4M
REPAIR OF CARCINOGEN-DAMAGED DNA IN HUMAN CHROMATINR01ES002614 · NIEHS · WASHINGTON STATE UNIVERSITY · PI SMERDON, MICHAEL J, WYRICK, JOHN J · 1985 to 2015
$2.5M
Mechanisms of genome instability induced by APOBEC Cytidine Deaminases & its impacts during cancer development - Diversity SupplementR01CA218112 · NCI · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A · 2017 to 2021
$2.2M
Environmentally-modulated cytosine deamination in genome instability and cancerR00ES022633 · NIEHS · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A · 2015 to 2017
$868k
Genome-wide analysis of UV damage formation, repair, and mutagenesisR21ES027937 · NIEHS · WASHINGTON STATE UNIVERSITY · PI ROBERTS, STEVEN A, WYRICK, JOHN J · 2017 to 2018
$419k
Direct activation of hematopoietic transcription factorsR21HL129063 · NHLBI · GEORGIA STATE UNIVERSITY · PI POON, GREGORY MAN KAI · 2015 to 2016
$415k
National Science Foundation (NSF) MCB 15451600NCI NIH HHS R01 CA218112NHLBI NIH HHS R21 HL129063NIAID NIH HHS T32 AI007025NIEHS NIH HHS R00 ES022633NIEHS NIH HHS R01 ES002614NIEHS NIH HHS R21 ES027937NIGMS NIH HHS T32 GM008336U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA218112U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R21HL129063U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) T32AI07025U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R00ES022633U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R01ES002614U.S. Department of Health & Human Services | NIH | National Institute of Environmental Health Sciences (NIEHS) R21ES027937
6 · The paper itself

Abstract

Recurrent mutations are frequently associated with transcription factor (TF) binding sites (TFBS) in melanoma, but the mechanism driving mutagenesis at TFBS is unclear. Here, we use a method called CPD-seq to map the distribution of UV-induced cyclobutane pyrimidine dimers (CPDs) across the human genome at single nucleotide resolution. Our results indicate that CPD lesions are elevated at active TFBS, an effect that is primarily due to E26 transformation-specific (ETS) TFs. We show that ETS TFs induce a unique signature of CPD hotspots that are highly correlated with recurrent mutations in melanomas, despite high repair activity at these sites. ETS1 protein renders its DNA binding targets extremely susceptible to UV damage in vitro, due to binding-induced perturbations in the DNA structure that favor CPD formation. These findings define a mechanism responsible for recurrent mutations in melanoma and reveal that DNA binding by ETS TFs is inherently mutagenic in UV-exposed cells.

Indexed as

Ultraviolet RaysBase SequenceBinding SitesDNAHumansMelanomaModels, BiologicalMutagenesisMutationNucleic Acid ConformationProtein BindingProto-Oncogene Protein c-ets-1Pyrimidine DimersDNAETS1 protein, humanProto-Oncogene Protein c-ets-1Pyrimidine Dimers

Identifiers

PMID29980679
PMCPMC6035183
OpenAlexW2810981777

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.