Evidence map›Paper›PMID 29980205›Full record

ArticleBMC veterinary research2018

Genetic characterization and mutation analysis of Qihe547 Aujeszky's disease virus in China.

Cun Liu, Yanhan Liu, Ye Tian, Xuehua Wei, Yue Zhang, Fulin Tian

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Cun LiuShandong Provincial Center for Animal Disease Control and Prevention, Ji'nan, 250022, Shandong, China.
Yanhan LiuCollege of Veterinary Medicine, China Agricultural University, Beijing, 100193, China.
Ye TianCollege of Veterinary Medicine, China Agricultural University, Beijing, 100193, China.
Xuehua WeiShandong Provincial Center for Animal Disease Control and Prevention, Ji'nan, 250022, Shandong, China.
Yue ZhangShandong Provincial Center for Animal Disease Control and Prevention, Ji'nan, 250022, Shandong, China.
Fulin TianShandong Provincial Center for Animal Disease Control and Prevention, Ji'nan, 250022, Shandong, China. fulintianjn@163.com.ORCID http://orcid.org/0000-0002-2907-1385
Shandong Center for Disease Control and Prevention · CNChina Agricultural University · CN

Funding

gricultural Technology Innovation Projects of Livestock and Poultry Breeding No
6 · The paper itself

Abstract

backgroundAujeszky's disease virus (ADV) can cause neurologic disease in young pigs, respiratory disease in older pigs and abortion or birth of mummified fetuses or stillborn neonates. The re-emergence of Aujeszky's disease (AD) in pig farms vaccinated with live vaccine (Bartha-K61) caused substantial economic losses to Chinese pig industry since late 2011. A field ADV, named Qihe547, was isolated from pigs that exhibited suspected AD clinical symptoms. To better understand the genetic characteristics and mutations of Qihe547 ADV, the whole genome was sequenced and analyzed.

resultsThe genomic length of Qihe547 ADV was 143,404 bp, with 73.59% G + C contents. Phylogenetic analysis based on the whole genome of ADV strains revealed that Chinese ADV strains were located to one group with three subgroups. Qihe547 ADV was closely related to these novel ADV strains isolated in China since 2012. Qihe547 presented numerous hypervariable regions compared with oversea ADV strains. In 34 genes of Qihe547 ADV, amino acid (AA) insertion or deletion were observed. In addition, numerous AA mutations were found in the main protective antigen genes (gB, gC and gD genes). The differences of potential antigenic peptides in the main protective antigens between Qihe547 ADV and ADV Bartha were discovered in the dominant antigenic regions of gB (AA59-AA126, AA507-AA734),the extracellular region of gC and gD.

conclusionHigh diversity was observed between Qihe547 and foreign ADV isolates. The AA variations and the differences of potential antigenic peptides in the important functional regions of the main protective antigen (gB, gC and gD) of ADV Qihe547 may contribute to immune evasion of the virus and may be partial reason that the virus escapes from the vaccination of Bartha-K61 vaccine. In a word, the effect of the variations obviously requires further research.

Indexed as

AnimalsChinaDisease OutbreaksGenome, ViralHerpesvirus 1, SuidMutationPhylogenyPolymerase Chain ReactionPseudorabiesSequence AlignmentSequence Analysis, DNASwineSwine DiseasesAujeszky’s disease virusPhylogenetic analysisQihe547Virus isolation

Identifiers

PMID29980205
PMCPMC6035464
OpenAlexW2882962388

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.