Evidence map›Paper›PMID 29979675›Full record

ArticlePLoS computational biology2018

A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants.

Sonja E M Boas, Joao Carvalho, Marloes van den Broek, Ester M Weijers, Marie-José Goumans, Pieter Koolwijk, Roeland M H Merks

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Autocrine inhibition of cell motility can drive epithelial branching morphogenesis in the absence of growth.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Sonja E M BoasCentrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands.ORCID 0000-0001-9413-7013
Joao CarvalhoCentrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands.ORCID 0000-0001-9955-4131
Marloes van den BroekAmsterdam Cardiovascular Sciences, VU University medical Center, Dept. of Physiology, Amsterdam, The Netherlands.
Ester M WeijersAmsterdam Cardiovascular Sciences, VU University medical Center, Dept. of Physiology, Amsterdam, The Netherlands.ORCID 0000-0002-6417-2026
Marie-José GoumansDepartment of Cell and Chemical Biology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0001-9344-6746
Pieter KoolwijkAmsterdam Cardiovascular Sciences, VU University medical Center, Dept. of Physiology, Amsterdam, The Netherlands.
Roeland M H MerksCentrum Wiskunde & Informatica (CWI), Amsterdam, The Netherlands.ORCID 0000-0002-6152-687X
Amsterdam UMC Location Vrije Universiteit Amsterdam · NLLeiden University · NLCentrum Wiskunde & Informatica · NLLeiden University Medical Center · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In experimental assays of angiogenesis in three-dimensional fibrin matrices, a temporary scaffold formed during wound healing, the type and composition of fibrin impacts the level of sprouting. More sprouts form on high molecular weight (HMW) than on low molecular weight (LMW) fibrin. It is unclear what mechanisms regulate the number and the positions of the vascular-like structures in cell cultures. To address this question, we propose a mechanistic simulation model of endothelial cell migration and fibrin proteolysis by the plasmin system. The model is a hybrid, cell-based and continuum, computational model based on the cellular Potts model and sets of partial-differential equations. Based on the model results, we propose that a positive feedback mechanism between uPAR, plasmin and transforming growth factor β1 (TGFβ1) selects cells in the monolayer for matrix invasion. Invading cells releases TGFβ1 from the extracellular matrix through plasmin-mediated fibrin degradation. The activated TGFβ1 further stimulates fibrin degradation and keeps proteolysis active as the sprout invades the fibrin matrix. The binding capacity for TGFβ1 of LMW is reduced relative to that of HMW. This leads to reduced activation of proteolysis and, consequently, reduced cell ingrowth in LMW fibrin compared to HMW fibrin. Thus our model predicts that endothelial cells in LMW fibrin matrices compared to HMW matrices show reduced sprouting due to a lower bio-availability of TGFβ1.

Indexed as

Computer SimulationBiological AvailabilityCell MovementCells, CulturedEndothelial CellsEndothelium, VascularExtracellular MatrixFibrinFibrinogenFibrinolysinFibrinolysisHumansIn Vitro TechniquesMolecular WeightNeovascularization, PhysiologicProteolysisFibrinFibrinogenFibrinolysinReceptors, Urokinase Plasminogen ActivatorTGFB1 protein, humanTransforming Growth Factor beta1

Identifiers

PMID29979675
PMCPMC6072121
OpenAlexW2831561516

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.