ArticleNature biotechnology2018
KBase: The United States Department of Energy Systems Biology Knowledgebase.
Abstract read
In one paragraph
Article in Nature biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 934 papers.
0numbers the graph read from it
0cells of the map it votes in
934citing papers in PubMed
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
934 citing papers in PubMed.
- Streptomyces chodovensis sp. nov.: a novel candidate for plant growth-promoting actinomycete from bare soil developing on Miocene lacustrine sediment of the Sokolov Coal Basin, Czech Republic.Antonie van Leeuwenhoek · 2026Article
- Draft genome sequences of threeMicrobiology resource announcements · 2026Article
- Integrating Metabolic Modeling and Targeted Supplementation for the Rapid Detection ofMicroorganisms · 2026Article
- Ecological Engineering of the Human Gut Microbiome: A Narrative Review and Framework for Next-Generation Therapeutics.Microorganisms · 2026Review
- Article
- Reciprocal Genome Projection Reveals Reference-Conditioned Functional Variation in ClinicalPathogens (Basel, Switzerland) · 2026Article
- Comparative Genomic Analysis of Clonal Variants of aMicroorganisms · 2026Article
- Genetic regulation of biosynthesis and resistance to redox-active phenazines inMicrobiology spectrum · 2026Article
- Microbiome education at under-resourced institutions: current status, barriers, and approaches to successful implementation.Journal of microbiology & biology education · 2026Article
- Unraveling the diversity and functional potential of cyanosphere microbiomes assembled from terrestrial cyanobacteria.Applied and environmental microbiology · 2026Article
- Computational Genomics for Resistome Characterization: Current Advancements and Future Challenges Under a One Health Perspective.Antibiotics (Basel, Switzerland) · 2026Review
- A Promising Strain for Wheat Growth Promotion and Antifungal Activity Against Fungal Phytopathogens:Microorganisms · 2026Article
- A metabolic model of the leaf-associated bacteriummSystems · 2026Article
- Whole-genome sequences ofMicrobiology resource announcements · 2026Article
- Draft genomes ofMicrobiology resource announcements · 2026Article
- Draft genome sequences of six bacterial isolates from aphid-infested sugar beet and witloof chicory.Microbiology resource announcements · 2026Article
- Post-wildfire soil bacterial MAGs and metagenome analysis.Microbiology resource announcements · 2026Article
- Article
- Article
- PacBio HiFi sequencing datasets of culture-enriched airborne microbial cave communities from dolomitic Sudwala Caves, South Africa.Data in brief · 2026Article
874 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
81 authors.
Adam P ArkinDepartment of Bioengineering, University of California, Berkeley, California, USA.ORCID 0000-0002-4999-2931
Robert W CottinghamBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Christopher S HenryMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Nomi L HarrisEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0001-6315-3707
Rick L StevensComputer Science Department and Computation Institute, University of Chicago, Chicago, Illinois, USA.
Sergei MaslovBiology Department, Brookhaven National Laboratory, Upton, New York, USA.
Paramvir DehalEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Doreen WareCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.ORCID 0000-0002-8125-3821
Fernando PerezComputational Research Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.ORCID 0000-0002-1725-9815
Shane CanonNational Energy Research Scientific Computing Center, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Michael W SneddonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Matthew L HendersonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
William J RiehlEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Dan Murphy-OlsonMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Stephen Y ChanEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Roy T KamimuraEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Sunita KumariCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Meghan M DrakeBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Thomas S BrettinComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Elizabeth M GlassMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Dylan ChivianEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Dan GunterComputational Research Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
David J WestonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Benjamin H AllenBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Jason BaumohlEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Aaron A BestDepartment of Biology, Hope College, Holland, Michigan, USA.
Ben BowenEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Steven E BrennerDepartment of Plant and Microbial Biology, University of California, Berkeley, California, USA.
Christopher C BunMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
John-Marc ChandoniaEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Jer-Ming ChiaCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Ric ColasantiMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Neal ConradComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
James J DavisComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Brian H DavisonBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Matthew DeJonghDepartment of Computer Science, Hope College, Holland, Michigan, USA.
Scott DevoidMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Emily DietrichComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Inna DubchakEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Janaka N EdirisingheMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Gang FangProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.
José P FariaMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.ORCID 0000-0001-9302-7250
Paul M FrybargerMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Wolfgang GerlachMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.ORCID 0000-0002-9746-3719
Annette GreinerNational Energy Research Scientific Computing Center, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
James GurtowskiCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Holly L HaunBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Fei HeBiology Department, Brookhaven National Laboratory, Upton, New York, USA.ORCID 0000-0002-1165-3248
Rashmi JainDepartment of Plant Pathology and Genome Center, University of California, Davis, Davis, California, USA.
Marcin P JoachimiakEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Kevin P KeeganMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Shinnosuke KondoDepartment of Computer Science, Hope College, Holland, Michigan, USA.
Vivek KumarCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Miriam L LandBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.ORCID 0000-0001-7102-0031
Folker MeyerMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.ORCID 0000-0003-1112-2284
Marissa MillsBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Pavel S NovichkovEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Taeyun OhDepartment of Plant Pathology and Genome Center, University of California, Davis, Davis, California, USA.ORCID 0000-0002-0947-1381
Gary J OlsenDepartment of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
Robert OlsonMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Bruce ParrelloMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Shiran PasternakCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Erik PearsonEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Sarah S PoonComputational Research Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Gavin A PriceEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Srividya RamakrishnanCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Priya RanjanBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
Pamela C RonaldDepartment of Plant Pathology and Genome Center, University of California, Davis, Davis, California, USA.
Michael C SchatzCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.ORCID 0000-0002-4118-4446
Samuel M D SeaverMathematics and Computer Science Division, Argonne National Laboratory, Argonne, Illinois, USA.
Maulik ShuklaComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Roman A SutorminEnvironmental Genomics and Systems Biology Division, E.O. Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Mustafa H SyedBiosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.
James ThomasonCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Nathan L TintleDepartment of Mathematics, Hope College, Holland, Michigan, USA.
Daifeng WangProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut, USA.ORCID 0000-0001-9190-3704
Fangfang XiaComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Hyunseung YooComputing, Environment, and Life Sciences Directorate, Argonne National Laboratory, Argonne, Illinois, USA.
Shinjae YooComputer Science and Math, Computer Science Initiative, Brookhaven National Laboratory, Upton, New York, USA.
Dantong YuComputer Science and Math, Computer Science Initiative, Brookhaven National Laboratory, Upton, New York, USA.
Funding
No grant is acknowledged in the PubMed record.
Abstract
PubMed holds no abstract for this paper.
Indexed as
Knowledge BasesComputational BiologyDatabase Management SystemsHumansSystems BiologyUnited States
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.