Evidence map›Paper›PMID 29978465›Full record

ArticleInternational journal of cancer2018

Genetic variant of IRAK2 in the toll-like receptor signaling pathway and survival of non-small cell lung cancer.

Yinghui Xu, Hongliang Liu, Shun Liu, Yanru Wang, Jichun Xie, Thomas E Stinchcombe, Li Su, Ruyang Zhang, David C Christiani, Wei Li and 1 more

Abstract read
In one paragraph

Article in International journal of cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
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  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Novel genetic variants ofAmerican journal of cancer research · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yinghui XuCancer Center, The First Hospital of Jilin University, Changchun, Jilin, 130021, China.
Hongliang LiuDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.ORCID 0000-0001-7639-0904
Shun LiuDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.
Yanru WangDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.
Jichun XieDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.
Thomas E StinchcombeDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.
Li SuDepartment of Environmental Health, Harvard School of Public Health, Boston, Massachusetts, 02115.
Ruyang ZhangDepartment of Environmental Health, Harvard School of Public Health, Boston, Massachusetts, 02115.
David C ChristianiDepartment of Environmental Health, Harvard School of Public Health, Boston, Massachusetts, 02115.
Wei LiCancer Center, The First Hospital of Jilin University, Changchun, Jilin, 130021, China.
Qingyi WeiDuke Cancer Institute, Duke University Medical Center, Durham, North Carolina, 27710.ORCID 0000-0002-3845-9445

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
The HSPH Education and Research Center of Occupational Safety and HealthT42OH008416 · OH · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2005 to 2025
$30.5M
The Boston Lung Cancer Survival CohortU01CA209414 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI David C Christiani · 2017 to 2026
$12.2M
Translational studies of Hsp90 inhibitors in NSCLCP50CA090578 · NCI · DANA-FARBER CANCER INST · PI YEAP, BEOW Y · 2008 to 2012
$11.4M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Molecular and Genetic Analysis of Lung Cancer SurvivalR01CA092824 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2002 to 2013
$5.9M
SPORE in Lung CancerP20CA090578 · NCI · DANA-FARBER CANCER INSTITUTE · PI JOHNSON, BRUCE E. · 2003 to 2007
$5.1M
GENETIC SUSCEPTIBILITY TO LUNG CANCERR01CA074386 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 1997 to 2008
$4.8M
NCI NIH HHS P20 CA090578NCI NIH HHS P30 CA014236NCI NIH HHS P30 CA021765NCI NIH HHS P50 CA090578NCI NIH HHS R01 CA074386NCI NIH HHS R01 CA092824NCI NIH HHS R35 CA197449NCI NIH HHS U01 CA209414NIOSH CDC HHS T42 OH008416
6 · The paper itself

Abstract

The toll-like receptor (TLR) signaling pathway plays an important role in the innate immune responses and antigen-specific acquired immunity. Aberrant activation of the TLR pathway has a significant impact on carcinogenesis or tumor progression. Therefore, we hypothesize that genetic variants in the TLR signaling pathway genes are associated with overall survival (OS) of patients with non-small cell lung cancer (NSCLC). To test this hypothesis, we first performed Cox proportional hazards regression analysis to evaluate associations between genetic variants of 165 TLR signaling pathway genes and NSCLC OS using the genome-wide association study (GWAS) dataset from the Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial (PLCO). The results were further validated by the Harvard Lung Cancer Susceptibility GWAS dataset. Specifically, we identified IRAK2 rs779901 C > T as a predictor of NSCLC OS, with a variant-allele (T) attributed hazards ratio (HR) of 0.78 [95% confidence interval (CI) = 0.67-0.91, P = 0.001] in the PLCO dataset, 0.84 (0.72-0.98, 0.031) in the Harvard dataset, and 0.81 (0.73-0.90, 1.08x10

Indexed as

AgedCarcinoma, Non-Small-Cell LungFemaleGenetic VariationGenome-Wide Association StudyHumansInterleukin-1 Receptor-Associated KinasesLung NeoplasmsMaleMiddle AgedMulticenter Studies as TopicPolymorphism, Single NucleotideProportional Hazards ModelsRandomized Controlled Trials as TopicRNA, MessengerSignal TransductionInterleukin-1 Receptor-Associated KinasesRNA, MessengerToll-Like Receptorsgenome-wide association studyNon-small cell lung canceroverall survivalsingle-nucleotide polymorphismtoll-like receptor

Identifiers

PMID29978465
PMCPMC6205899

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.