Evidence map›Paper›PMID 29978262›Full record

ArticleArchives of virology2018

First complete genome sequence of a European non-pathogenic rabbit calicivirus (lagovirus GI.3).

Evelyne Lemaitre, Françoise Zwingelstein, Stéphane Marchandeau, Ghislaine Le Gall-Reculé

Abstract read
In one paragraph

Article in Archives of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
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  3. Characterisation ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Evelyne LemaitrePloufragan-Plouzané Laboratory, Avian and Rabbit Virology, Immunology and Parasitology Unit, Anses, French Agency for Food, Environmental and Occupational Health and Safety, BP 53, 22440, Ploufragan, France.
Françoise ZwingelsteinPloufragan-Plouzané Laboratory, Avian and Rabbit Virology, Immunology and Parasitology Unit, Anses, French Agency for Food, Environmental and Occupational Health and Safety, BP 53, 22440, Ploufragan, France.
Stéphane MarchandeauResearch and Expertise Department, UPFS, ONCFS, National Hunting and Wildlife Agency, CS 42355, 44323, Nantes Cedex 3, France.
Ghislaine Le Gall-ReculéPloufragan-Plouzané Laboratory, Avian and Rabbit Virology, Immunology and Parasitology Unit, Anses, French Agency for Food, Environmental and Occupational Health and Safety, BP 53, 22440, Ploufragan, France. ghislaine.legall-recule@anses.fr.ORCID http://orcid.org/0000-0003-4557-6532

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the full genome sequence of the non-pathogenic rabbit lagovirus Lagovirus europaeus/GI.3/O cun/FR/2006/06-11 (GI.3/06-11), collected from a healthy French domestic rabbit in 2006, and initially described as 06-11 strain. The sequence reveals a genomic organization similar to lagoviruses. It was 7,436 bases long and contained two open reading frames (ORF). A dipeptide variation at the potential p23/2C-like helicase cleavage site (EE instead of ED) was observed, a feature only shared with non-recombinant pathogenic lagoviruses in GI.2 and with two European brown hare syndrome viruses (EBHSV) collected in 1982 in Sweden. GI.3/06-11 has only one initiation codon at the beginning of the ORF2 like the avirulent Italian rabbit calicivirus (RCV) and EBHSV. Previous genetic analyses based on the capsid gene sequences showed that GI.3/06-11 was closer to the RCV and pathogenic lagoviruses GI.1 strains than other lagoviruses. This study, by revealing that GI.3/06-11 genome sequence significantly clustered with pathogenic GI.2 strains, gives prominence of new genetic relationship among lagoviruses and should contribute to understand the emergence of pathogenic strains.

Indexed as

Genome, ViralAnimalsCaliciviridaeCaliciviridae InfectionsCapsid ProteinsEuropeOpen Reading FramesPhylogenyRabbitsCapsid Proteins

Identifiers

PMID29978262
PMCPMC6132933

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.