Evidence map›Paper›PMID 29976992›Full record

ArticleScientific reports2018

DNA methylation landscape of the genes regulating D-serine and D-aspartate metabolism in post-mortem brain from controls and subjects with schizophrenia.

Simona Keller, Daniela Punzo, Mariella Cuomo, Ornella Affinito, Lorena Coretti, Silvia Sacchi, Ermanno Florio, Francesca Lembo, Massimo Carella, Massimiliano Copetti and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. d-Amino Acids and pLG72 in Alzheimer's Disease and Schizophrenia.International journal of molecular sciences · 2021
    Review
  9. DNA methylation impact on Fabry disease.Clinical epigenetics · 2021
    Review
  10. DNA Methylation Profiles ofBiomolecules · 2021
    Article
  11. Article
  12. Review
  13. Advances in D-Amino Acids in Neurological Research.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 2 countries.

Simona KellerDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Daniela PunzoLaboratory of Behavioural Neuroscience, Ceinge Biotecnologie Avanzate, 80145, Naples, Italy.
Mariella CuomoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Ornella AffinitoDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Lorena CorettiDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Silvia SacchiDipartimento di Biotecnologie e Scienze della Vita, Università degli Studi dell'Insubria, 21100, Varese, Italy.ORCID 0000-0002-2338-2561
Ermanno FlorioDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Francesca LemboDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Massimo CarellaMedical Genetics Unit, IRCCS Casa Sollievo della Sofferenza, 71013, San Giovanni Rotondo, FG, Italy.
Massimiliano CopettiUnit of Biostatistics, IRCCS Casa Sollievo della Sofferenza, 71013, San Giovanni Rotondo, FG, Italy.
Sergio CocozzaDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy.
Darrick T BaluDepartment of Psychiatry, Harvard Medical School, Boston, 02115, MA, USA.
Francesco ErricoLaboratory of Behavioural Neuroscience, Ceinge Biotecnologie Avanzate, 80145, Naples, Italy.
Alessandro UsielloLaboratory of Behavioural Neuroscience, Ceinge Biotecnologie Avanzate, 80145, Naples, Italy. usiello@ceinge.unina.it.
Lorenzo ChiariottiDepartment of Molecular Medicine and Medical Biotechnology, University of Naples "Federico II", 80131, Naples, Italy. chiariot@unina.it.
Institute for Experimental Endocrinology and Oncology · ITCasa Sollievo della Sofferenza · ITFederico II University Hospital · ITUniversity of Naples Federico II · ITHarvard University · USUniversity of California San Diego · USUniversity of Campania "Luigi Vanvitelli" · ITUniversity of Insubria · IT

Funding

NMDA receptor hypofunction contributes to the dendritic dysplasia in schizophreniR00MH099252 · NIMH · MCLEAN HOSPITAL · PI BALU, DARRICK T · 2015 to 2017
$726k
Brain and Behavior Research Foundation (Brain & Behavior Research Foundation) 23968Brain and Behavior Research Foundation (Brain & Behavior Research Foundation) 26370NIMH NIH HHS R00 MH099252
6 · The paper itself

Abstract

The spatio-temporal regulation of genes involved in the synthesis and degradation of D-serine and D-aspartate such as serine racemase (SR), D-amino acid oxidase (DAO), G72 and D-aspartate oxidase (DDO), play pivotal roles in determining the correct levels of these D-amino acids in the human brain. Here we provide a comprehensive analysis of mRNA expression and DNA methylation status of these genes in post-mortem samples from hippocampus, dorsolateral prefrontal cortex, and cerebellum from patients with schizophrenia and non-psychiatric controls. DNA methylation analysis was performed at an ultradeep level, measuring individual epialleles frequency by single molecule approach. Differential CpG methylation and expression was detected across different brain regions, although no significant correlations were found with diagnosis. G72 showed the highest CpG and non-CpG methylation degree, which may explain the repression of G72 transcription in the brain regions considered here. Conversely, in line with the sustained SR mRNA expression in the analyzed areas, very low methylation levels were detected at this gene's regulatory regions. Furthermore, for DAO and DDO, our single-molecule methylation approach demonstrated that analysis of epiallele distribution was able to detect differences in DNA methylation representing area-specific methylation signatures, which are likely not detectable with targeted or genome-wide classic methylation analyses.

Indexed as

Postmortem ChangesAllelesBrainCase-Control StudiesD-Amino-Acid OxidaseD-Aspartate OxidaseD-Aspartic AcidDNA MethylationEpigenesis, GeneticHumansPromoter Regions, GeneticRNA, MessengerSchizophreniaSerineD-Amino-Acid OxidaseDAO protein, humanD-Aspartate OxidaseD-Aspartic AcidDDO protein, humanRNA, MessengerSerine

Identifiers

PMID29976992
PMCPMC6033866
OpenAlexW2809870307

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.