Evidence map›Paper›PMID 29976840›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Targeting cancer addiction for SALL4 by shifting its transcriptome with a pharmacologic peptide.

Bee Hui Liu, Chacko Jobichen, C S Brian Chia, Tim Hon Man Chan, Jing Ping Tang, Theodora X Y Chung, Jia Li, Anders Poulsen, Alvin W Hung, Xiaoying Koh-Stenta and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 1 synthesis or guideline pooled it, 71 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 2 countries.

Bee Hui LiuCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Chacko JobichenCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
C S Brian ChiaExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Tim Hon Man ChanCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Jing Ping TangCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Theodora X Y ChungCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Jia LiCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Anders PoulsenExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Alvin W HungExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Xiaoying Koh-StentaExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Yaw Sing TanBioinformatics Institute, Agency for Science, Technology and Research, 138671 Singapore.ORCID 0000-0002-2522-9421
Chandra S VermaDepartment of Biological Sciences, National University of Singapore, 117543 Singapore.
Hong Kee TanCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Chan-Shuo WuCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Feng LiCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Jeffrey HillExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Joma JoyExperimental Therapeutics Centre, Agency for Science, Technology and Research, 138669 Singapore.
Henry YangCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore.
Li ChaiBrigham and Women's Hospital, Harvard Medical School, Boston, MA 02115; lchai@bwh.harvard.edu dbsjayar@nus.edu.sg csidgt@nus.edu.sg.
J SivaramanDepartment of Biological Sciences, National University of Singapore, 117543 Singapore; lchai@bwh.harvard.edu dbsjayar@nus.edu.sg csidgt@nus.edu.sg.
Daniel G TenenCancer Science Institute of Singapore, National University of Singapore, 117599 Singapore; lchai@bwh.harvard.edu dbsjayar@nus.edu.sg csidgt@nus.edu.sg.
National University of Singapore · SGAgency for Science, Technology and Research · SGBrigham and Women's Hospital · USHarvard University · US

Funding

TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
Transcriptional and epigenetic heterogeneity of stem/progenitor cellsP01HL131477 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI David T Scadden · 2017 to 2026
$24.6M
Transcription regulation in hematopoiesisP01HL095489 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI PARK, SHINYOUNG · 2010 to 2020
$20.1M
Mechanisms of regulation by RNA in acute myeloid leukemiaR35CA197697 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2015 to 2021
$7.1M
NCI NIH HHS P01 CA066996NCI NIH HHS R35 CA197697NHLBI NIH HHS P01 HL095489NHLBI NIH HHS P01 HL131477
6 · The paper itself

Abstract

Sal-like 4 (SALL4) is a nuclear factor central to the maintenance of stem cell pluripotency and is a key component in hepatocellular carcinoma, a malignancy with no effective treatment. In cancer cells, SALL4 associates with nucleosome remodeling deacetylase (NuRD) to silence tumor-suppressor genes, such as PTEN. Here, we determined the crystal structure of an amino-terminal peptide of SALL4(1-12) complexed to RBBp4, the chaperone subunit of NuRD, at 2.7 Å, and subsequent design of a potent therapeutic SALL4 peptide (FFW) capable of antagonizing the SALL4-NURD interaction using systematic truncation and amino acid substitution studies. FFW peptide disruption of the SALL4-NuRD complex resulted in unidirectional up-regulation of transcripts, turning SALL4 from a dual transcription repressor-activator mode to singular transcription activator mode. We demonstrate that FFW has a target affinity of 23 nM, and displays significant antitumor effects, inhibiting tumor growth by 85% in xenograft mouse models. Using transcriptome and survival analysis, we discovered that the peptide inhibits the transcription-repressor function of SALL4 and causes massive up-regulation of transcripts that are beneficial to patient survival. This study supports the SALL4-NuRD complex as a drug target and FFW as a viable drug candidate, showcasing an effective strategy to accurately target oncogenes previously considered undruggable.

Indexed as

Antineoplastic AgentsNeoplasm ProteinsNeoplasmsPeptidesTranscription FactorsCell Line, TumorGene Expression RegulationHumansProtein Structure, QuaternaryRetinoblastoma-Binding Protein 4TranscriptomeAntineoplastic AgentsNeoplasm ProteinsPeptidesRBBP4 protein, humanRetinoblastoma-Binding Protein 4SALL4 protein, humanTranscription FactorsHCCpeptidomimeticRBBp4/NuRDSALL4structural guided design

Identifiers

PMID29976840
PMCPMC6065023
OpenAlexW2839764993

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.