Evidence map›Paper›PMID 29976661›Full record

ArticleJournal of virology2018

Crystal Structure of the Dimerized N Terminus of Porcine Circovirus Type 2 Replicase Protein Reveals a Novel Antiviral Interface.

Gao Luo, Xiongfei Zhu, Yang Lv, Bomin Lv, Jin'e Fang, Shengbo Cao, Huanchun Chen, Guiqing Peng, Yunfeng Song

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Analysis of the anti-PCV2 mechanism ofFrontiers in microbiology · 2024
    Article
  8. Article
  9. The crystal structure of the human smacovirus 1 Rep domain.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  10. Vertebrate-tropism of a cressdnavirus lineage implicated by poxvirus gene capture.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Apoptosis Triggered by ORF3 Proteins of theFrontiers in cellular and infection microbiology · 2020
    Review
  17. Crystal structure of the Wheat dwarf virus Rep domain.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Gao LuoState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Xiongfei ZhuState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Yang LvCollege of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.
Bomin LvCollege of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.
Jin'e FangState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Shengbo CaoState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Huanchun ChenState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Guiqing PengState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.
Yunfeng SongState Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China syf@mail.hzau.edu.cn.
Huazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Two replicase (Rep) proteins, Rep and Rep', are encoded by porcine circovirus (PCV) ORF1; Rep is a full ORF1 transcript, and Rep' is a truncated transcript generated by splicing. These two proteins are crucial for the rolling-circle replication (RCR) of PCV. The N-terminal sequences of Rep and Rep' are identical and interact to form homo- or heterodimers. The three types of dimers perform different functions during replication. A structural examination of the interfacing termini has not been performed. In this study, a crystal structure of dimerized Rep protein N termini was resolved at 2.7 Å. The dimerized protein was maintained by nine intermolecular hydrogen bonds and 15 pairs of hydrophobic interactions. The amino acid residue Ile37 participates in 11 of the hydrophobic interactions, mostly with its side chain. To find the predominant sites for protein dimerization and virus replication, a series of mutant proteins and virus replicons were generated by alanine substitution. Of all the single amino acid substitutions, the mutation at Ile37 showed the greatest effect on protein dimerization and virus replication. A double mutation at Leu35 and Ile37 almost eliminated protein dimerization and had the greatest negative effect on virus replication. These studies demonstrate that Leu35 and Ile37 are the most important residues for protein dimerization and are crucial for virus replication. Our results also show that PCV replication can be decreased by disrupting the dimerization of Rep or Rep' at the N terminus, suggesting that the structural interface responsible for dimerization offers a promising antiviral target.

Indexed as

DimerizationAmino Acid SubstitutionAnimalsCircovirusCrystallizationDNA HelicasesDNA ReplicationDNA, ViralMutationSwineViral ProteinsVirus ReplicationDNA HelicasesDNA, ViralViral Proteinsantiviral interfacecrystal structuredimerizationporcine circovirus type 2 (PCV2)replicase (Rep)

Identifiers

PMID29976661
PMCPMC6146719
OpenAlexW2810982970

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.