Evidence map›Paper›PMID 29975103›Full record

ArticleAmerican journal of physiology. Lung cellular and molecular physiology2018

Dissociation, cellular isolation, and initial molecular characterization of neonatal and pediatric human lung tissues.

Gautam Bandyopadhyay, Heidie L Huyck, Ravi S Misra, Soumyaroop Bhattacharya, Qian Wang, Jared Mereness, Jacquelyn Lillis, Jason R Myers, John Ashton, Timothy Bushnell and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Lung cellular and molecular physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Frontiers in immunology · 2021
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Cell Population-resolved Multiomics Atlas of the Developing Lung.American journal of respiratory cell and molecular biology · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Impact of enzymatic digestion on single cell suspension yield from peripheral human lung tissue.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2023
    Article
  11. Article
  12. Proteomic Analysis of Human Lung Development.American journal of respiratory and critical care medicine · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Low-dose hyperoxia primes airways for fibrosis in mice after influenza A infection.American journal of physiology. Lung cellular and molecular physiology · 2021
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Gautam BandyopadhyayDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Heidie L HuyckDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Ravi S MisraDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Soumyaroop BhattacharyaDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.ORCID 0000-0003-1140-7845
Qian WangDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Jared MerenessDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Jacquelyn LillisUniversity of Rochester Genomics Research Center, University of Rochester Medical Center , Rochester, New York.
Jason R MyersUniversity of Rochester Genomics Research Center, University of Rochester Medical Center , Rochester, New York.
John AshtonUniversity of Rochester Genomics Research Center, University of Rochester Medical Center , Rochester, New York.
Timothy BushnellUniversity of Rochester Flow Cytometry Core Facility, University of Rochester Medical Center , Rochester, New York.
Matthew CochranUniversity of Rochester Flow Cytometry Core Facility, University of Rochester Medical Center , Rochester, New York.
Jeanne Holden-WiltseUniversity of Rochester Biocomputational Center, University of Rochester Medical Center , Rochester, New York.
Philip KatzmanDepartment of Pathology, University of Rochester Medical Center , Rochester, New York.
Gail DeutschDepartment of Pathology, Seattle Children's Hospital, University of Washington , Seattle, Washington.
Jeffrey A WhitsettDivision of Neonatology, Perinatal and Pulmonary Biology Cincinnati Children's Hospital Medical Center , Cincinnati, Ohio.
Yan XuDivision of Neonatology, Perinatal and Pulmonary Biology Cincinnati Children's Hospital Medical Center , Cincinnati, Ohio.
Thomas J MarianiDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
Gloria S PryhuberDivision of Neonatology, Department of Pediatrics, University of Rochester Medical Center , Rochester, New York.
University of Rochester Medical Center · USCincinnati Children's Hospital Medical Center · USSeattle Children's Hospital · US

Funding

The University of Rochester's Clinical and Translational Science InstituteUL1TR002001 · NCATS · UNIVERSITY OF ROCHESTER · PI WILSON, KAREN M., ZAND, MARTIN S · 2016 to 2024
$34.6M
The University of Rochester's Clinical and Translational Science InstituteUL1TR000042 · NCATS · UNIVERSITY OF ROCHESTER · PI BENNETT, NANCY M, KIEBURTZ, KARL D. · 2012 to 2015
$14.4M
BioRepository for INvestigation of Diseases of the Lung (BRINDL) - Phase IIIU01HL148861 · NHLBI · UNIVERSITY OF ROCHESTER · PI GLORIA S PRYHUBER · 2019 to 2026
$9.7M
Biorepository for Investigation of Neonatal Diseases of Lung-Normal (BRINDL-NL)U01HL122700 · NHLBI · UNIVERSITY OF ROCHESTER · PI PRYHUBER, GLORIA S · 2014 to 2018
$6.1M
LungMap Phase II - Building a multidimensional map of developing human lungU01HL148856 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI WHITSETT, JEFFREY A, XU, YAN · 2019 to 2023
$4.5M
"Lung MAP" Atlas Research CenterU01HL122642 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI POTTER, S. STEVEN, WHITSETT, JEFFREY A · 2014 to 2018
$3.9M
Role of EMC3/TMEM111 in Alveolar Epithelial Cell FunctionR01HL136722 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI LIN, XINHUA, WHITSETT, JEFFREY A · 2017 to 2020
$2.1M
NCATS NIH HHS UL1 TR000042NCATS NIH HHS UL1 TR002001NHLBI NIH HHS R01 HL136722NHLBI NIH HHS U01 HL122642NHLBI NIH HHS U01 HL122700NHLBI NIH HHS U01 HL148856NHLBI NIH HHS U01 HL148861
6 · The paper itself

Abstract

Human lung morphogenesis begins by embryonic life and continues after birth into early childhood to form a complex organ with numerous morphologically and functionally distinct cell types. Pulmonary organogenesis involves dynamic changes in cell proliferation, differentiation, and migration of specialized cells derived from diverse embryonic lineages. Studying the molecular and cellular processes underlying formation of the fully functional lung requires isolating distinct pulmonary cell populations during development. We now report novel methods to isolate four major pulmonary cell populations from pediatric human lung simultaneously. Cells were dissociated by protease digestion of neonatal and pediatric lung and isolated on the basis of unique cell membrane protein expression patterns. Epithelial, endothelial, nonendothelial mesenchymal, and immune cells were enriched by fluorescence-activated cell sorting. Dead cells and erythrocytes were excluded by 7-aminoactinomycin D uptake and glycophorin-A (CD235a) expression, respectively. Leukocytes were identified by membrane CD45 (protein tyrosine phosphatase, receptor type C), endothelial cells by platelet endothelial cell adhesion molecule-1 (CD31) and vascular endothelial cadherin (CD144), and both were isolated. Thereafter, epithelial cell adhesion molecule (CD326)-expressing cells were isolated from the endothelial- and immune cell-depleted population to enrich epithelial cells. Cells lacking these membrane markers were collected as "nonendothelial mesenchymal" cells. Quantitative RT-PCR and RNA sequencing analyses of population specific transcriptomes demonstrate the purity of the subpopulations of isolated cells. The method efficiently isolates major human lung cell populations that we announce are now available through the National Heart, Lung, and Blood Institute Lung Molecular Atlas Program (LungMAP) for their further study.

Indexed as

BiomarkersCadaverCell DifferentiationCells, CulturedCell SeparationChildChild, PreschoolFemaleFlow CytometryHumansInfantInfant, NewbornLungLung DiseasesMaleBiomarkersfluorescence-based cell sortinghuman lung cell markershuman pediatric lung cell populations

Identifiers

PMID29975103
PMCPMC6230879
OpenAlexW2850538482

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.