ArticleBMC plant biology2018
Transcriptome analysis of alternative splicing in peanut (Arachis hypogaea L.).
Article in BMC plant biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 20 citations in OpenAlex.
- De novo transcriptome and tissue-specific gene expression analysis in three types of barley following exploring the mechanism of quercetin content in purple barley (Hordeum vulgare).BMC plant biology · 2026Article
- Molecular mechanisms of how black barley accumulates higher anthocyanins than blue barley following transcriptomic evaluation and expression analysis of key genes in anthocyanins biosynthesis pathway.Frontiers in plant science · 2025Article
- Alternative splicing in ABA signaling during seed germination.Frontiers in plant science · 2023Review
- Head transcriptome profiling of glossiphoniid leech (Open biology · 2022Article
- Differential alternative splicing genes and isoform co-expression networks ofFrontiers in plant science · 2022Article
- Full-length transcriptome analysis of pecan (Carya illinoinensis) kernels.G3 (Bethesda, Md.) · 2021Article
- Characteristics of RNA alternative splicing and its potential roles in ginsenoside biosynthesis in a single plant of ginseng, Panax ginseng C.A. Meyer.Molecular genetics and genomics : MGG · 2021Article
- Alternative Splicing Dynamics During the Lifecycle ofFrontiers in plant science · 2021Article
- A Tissue-Specific Landscape of Alternative Polyadenylation, lncRNAs, TFs, and Gene Co-expression Networks inFrontiers in plant science · 2021Article
- Transcriptome Profile Reveals Drought-Induced Genes Preferentially Expressed in Response to Water Deficit in Cultivated Peanut (Frontiers in plant science · 2021Article
- Discovery, identification, and functional characterization of long noncoding RNAs in Arachis hypogaea L.BMC plant biology · 2020Article
- Alternative Splicing Enhances the Transcriptome Complexity ofFrontiers in plant science · 2020Article
- Differentially and Co-expressed Genes in Embryo, Germ-Line and Somatic Tissues ofG3 (Bethesda, Md.) · 2019Article
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Authors and funding
7 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundAlternative splicing (AS) represents a mechanism widely used by eukaryotes for the post-transcriptional regulation of genes. The detailed exploration of AS in peanut has not been documented.
resultsThe strand-specific RNA-Seq technique was exploited to characterize the distribution of AS in the four samples of peanut (FH1-seed1, FH1-seed2, FH1-root and FH1-leaf). AS was detected as affecting around 37.2% of the full set of multi-exon genes. Some of these genes experienced AS throughout the plant, while in the case of others, the effect was organ-specific. Overall, AS was more frequent in the seed than in either the root or leaf. The predominant form of AS was intron retention, and AS in transcription start site and transcription terminal site were commonly identified in all the four samples. It is interesting that in genes affected by AS, the majority experienced only a single type of event. Not all of the in silico predicted transcripts appeared to be translated, implying that these are either degraded or sequestered away from the translation machinery. With respect to genes involved in fatty acid metabolism, about 61.6% were shown to experience AS.
conclusionOur report contributes significantly in AS analysis of peanut genes in general, and these results have not been mentioned before. The specific functions of different AS forms need further investigation.
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