Evidence map›Paper›PMID 29971797›Full record

ArticleJournal of medical primatology2018

Determination of major histocompatibility class I and class II genetic composition of the Caribbean Primate Center specific pathogen-free rhesus macaque (Macaca mulatta) colony based on massively parallel sequencing.

Sreetharan Kanthaswamy, Robert F Oldt, Jillian Ng, David Glenn Smith, Melween I Martínez, Carlos A Sariol

Abstract read
In one paragraph

Article in Journal of medical primatology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Pedigree Data from Six Rhesus Macaque (Journal of the American Association for Laboratory Animal Science : JAALAS · 2023
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sreetharan KanthaswamyCalifornia National Primate Research Center, University of California, Davis, CA, USA.ORCID 0000-0003-4503-6886
Robert F OldtSchool of Mathematics and Natural Sciences, Arizona State University (ASU) at the West Campus, Glendale, AZ, USA.
Jillian NgCalifornia National Primate Research Center, University of California, Davis, CA, USA.
David Glenn SmithCalifornia National Primate Research Center, University of California, Davis, CA, USA.
Melween I MartínezCaribbean Primate Research Center, University of Puerto Rico-Medical Sciences Campus, San Juan, Puerto Rico.
Carlos A SariolCaribbean Primate Research Center, University of Puerto Rico-Medical Sciences Campus, San Juan, Puerto Rico.
Maricopa Community Colleges - Glendale Community College · USUniversity of California, Davis · USUniversity of Puerto Rico, Medical Sciences Campus · PR

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
Viral TestingU42OD021458 · OD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Melween I. Martinez · 2016 to 2026
$45.1M
Translational Science InitiativeP40OD012217 · OD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI CARLOS A SARIOL · 2012 to 2026
$40.4M
Establishment & maintenance of a closed CPRC SPF colonyU42OD011128 · OD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI SARIOL, CARLOS A · 2012 to 2015
$4.4M
NIH HHS P40 OD012217NIH HHS P51 OD011107NIH HHS U42 OD011128NIH HHS U42 OD021458
6 · The paper itself

Abstract

backgroundKnowledge of major histocompatibility complex (MHC) composition and distribution in rhesus macaque colonies is critical for management strategies that maximize the utility of this model for biomedical research.

methodsVariation within the Mamu-A and Mamu-B (class I) and DRB, DQA/B, and DPA/B (class II) regions of 379 animals from the Caribbean Primate Research Center's (CPRC) specific pathogen free (SPF) colony was examined using massively parallel sequencing.

resultsAnalyses of the 7 MHC loci revealed a background of Indian origin with high levels of variation despite past genetic bottlenecks. All loci exhibited mutual linkage disequilibria while conforming to Hardy-Weinberg expectations suggesting the achievement of mutation-selection balance.

conclusionThe CPRC's SPF colony is a significant resource for research on AIDS and other infectious agents. Characterizing colony-wide MHC variability facilitates the breeding and selection of animals bearing desired haplotypes and increases the investigator's ability to understand the immune responses mounted by these animals.

Indexed as

Gene FrequencyGenes, MHC Class IGenes, MHC Class IIAllelesAnimalsAnimals, LaboratoryHaplotypesHigh-Throughput Nucleotide SequencingMacaca mulattaPuerto RicoSpecific Pathogen-Free Organismscolony genetic structuregenetic managementmajor histocompatibility complex genotypingMamu haplotypesnext generation sequence

Identifiers

PMID29971797
PMCPMC6234078
OpenAlexW2811490439

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.