Evidence map›Paper›PMID 29971617›Full record

ArticleMolecular diversity2019

QEX: target-specific druglikeness filter enhances ligand-based virtual screening.

Masahiro Mochizuki, Shogo D Suzuki, Keisuke Yanagisawa, Masahito Ohue, Yutaka Akiyama

Abstract read
In one paragraph

Article in Molecular diversity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Masahiro MochizukiIMSBIO, Co., Ltd, Owl tower 6F, 4-21-1, Higashi-ikebukuro, Toshima-ku, Tokyo, 170-0013, Japan.
Shogo D SuzukiSchool of Computing, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, Tokyo, 152-8550, Japan.
Keisuke YanagisawaSchool of Computing, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, Tokyo, 152-8550, Japan.ORCID http://orcid.org/0000-0003-0224-0035
Masahito OhueSchool of Computing, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, Tokyo, 152-8550, Japan.ORCID http://orcid.org/0000-0002-0120-1643
Yutaka AkiyamaSchool of Computing, Tokyo Institute of Technology, 2-12-1 W8-76, Ookayama, Meguro-ku, Tokyo, 152-8550, Japan. akiyama@c.titech.ac.jp.ORCID http://orcid.org/0000-0003-2863-8703

Funding

Core Research for Evolutional Science and Technology JPMJCR1303Japan Agency for Medical Research and Development Life Science Research (Basis for Supporting Innovative Drug DiscoveryJapan Agency for Medical Research and Development Life Science Research (BINDS)) (JP17am0101112)Japan Agency for Medical Research and Development Platform Project for Supporting Drug DiscoveryJapan Society for the Promotion of Science 15K16081Japan Society for the Promotion of Science 17H01814Japan Society for the Promotion of Science 24240044Ministry of Education, Culture, Sports, Science and Technology EcosystemsMinistry of Education, Culture, Sports, Science and Technology the Program for Building Regional InnovationNational Institute of Advanced Industrial Science and Technology AIST-Tokyo Tech Real World Big-Data Computation Open Innovation Laboratory
6 · The paper itself

Abstract

Druglikeness is a useful concept for screening drug candidate compounds. We developed QEX, which is a new druglikeness index specific to individual targets. QEX is an improvement of the quantitative estimate of druglikeness (QED) method, which is a popular quantitative evaluation method of druglikeness proposed by Bickerton et al. QEX models the physicochemical properties of compounds that act on each target protein based on the concept of QED modeling physicochemical properties from information on US Food and Drug Administration-approved drugs. The result of the evaluation of PubChem assay data revealed that QEX showed better performance than the original QED did (the area under the curve value of the receiver operating characteristic curve improved by 0.069-0.236). We also present the c-Src inhibitor filtering results of the QEX constructed using Src family kinase inhibitors as a case study. QEX distinguished the inhibitors and non-inhibitors better than QED did. QEX works efficiently even when datasets of inactive compounds are unavailable. If both active and inactive compounds are present, QEX can be used as an initial filter to enhance the screening ability of conventional ligand-based virtual screenings.

Indexed as

Drug DiscoveryProtein Kinase InhibitorsModels, Molecularsrc-Family KinasesProtein Kinase Inhibitorssrc-Family KinasesComputational drug discoveryDruglikenessQEXQuantitative estimate of druglikeness (QED)Virtual screening

Identifiers

PMID29971617
PMCPMC6394530

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.