Evidence map›Paper›PMID 29970176›Full record

ArticleHuman genomics2018

Whole-exome sequencing identifies novel pathogenic mutations and putative phenotype-influencing variants in Polish limb-girdle muscular dystrophy patients.

Jakub Piotr Fichna, Anna Macias, Marcin Piechota, Michał Korostyński, Anna Potulska-Chromik, Maria Jolanta Redowicz, Cezary Zekanowski

Open access · goldAbstract read
In one paragraph

Article in Human genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 56 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Jakub Piotr FichnaDepartment of Neurodegenerative Disorders, Mossakowski Medical Research Centre, Polish Academy of Sciences, 5 Pawinskiego St., 02-106, Warsaw, Poland. jfichna@imdik.pan.pl.ORCID 0000-0002-4077-4807
Anna MaciasDepartment of Neurology, Medical University of Warsaw, 1a Banacha St., 02-097, Warsaw, Poland.
Marcin PiechotaDepartment of Molecular Neuropharmacology, Institute of Pharmacology, Polish Academy of Sciences, 31-344, Krakow, Poland.
Michał KorostyńskiDepartment of Molecular Neuropharmacology, Institute of Pharmacology, Polish Academy of Sciences, 31-344, Krakow, Poland.
Anna Potulska-ChromikDepartment of Neurology, Medical University of Warsaw, 1a Banacha St., 02-097, Warsaw, Poland.
Maria Jolanta RedowiczLaboratory of Molecular Basis of Cell Motility, Department of Biochemistry, Nencki Institute of Experimental Biology, 3 Pasteur St., 02-093, Warsaw, Poland.
Cezary ZekanowskiDepartment of Neurodegenerative Disorders, Mossakowski Medical Research Centre, Polish Academy of Sciences, 5 Pawinskiego St., 02-106, Warsaw, Poland.
Maj Institute of Pharmacology · PLMedical University of Warsaw · PLMossakowski Medical Research Institute, Polish Academy of Sciences · PLInstytut Biologii Doświadczalnej im. Marcelego Nenckiego · PL

Funding

Krajowy Naukowy Osrodek Wiodacy KNOW-MMRCNarodowe Centrum Nauki 2013/09/B/NZ4/03258Narodowe Centrum Nauki 2015/19/N/NZ2/02915
6 · The paper itself

Abstract

backgroundLimb girdle muscular dystrophies (LGMD) are a group of heterogeneous hereditary myopathies with similar clinical symptoms. Disease onset and progression are highly variable, with an elusive genetic background, and around 50% cases lacking molecular diagnosis.

methodsWhole exome sequencing (WES) was performed in 73 patients with clinically diagnosed LGMD. A filtering strategy aimed at identification of variants related to the disease included integrative analysis of WES data and human phenotype ontology (HPO) terms, analysis of genes expressed in muscle, analysis of the disease-associated interactome and copy number variants analysis.

resultsGenetic diagnosis was possible in 68.5% of cases. On average, 36.3 rare variants in genes associated with various muscle diseases per patient were found that could relate to the clinical phenotype. The putative causative mutations were mostly in LGMD-associated genes, but also in genes not included in the current LGMD classification (DMD, COL6A2, and COL6A3). In three patients, mutations in two genes were suggested as the joint cause of the disease (CAPN3+MYH7, COL6A3+CACNA1S, DYSF+MYH7). Moreover, a variety of phenotype-influencing variants were postulated, including in patients with an identified already known primary pathogenic mutation.

conclusionsWe hypothesize that LGMD could be better described as oligogenic disorders in which dominant clinical presentation can result from the combined effect of mutations in a set of genes. In this view, the inter- and intrafamilial variability could reflect a specific genetic background and the presence of sets of phenotype-influencing or co-causative mutations in genes that either interact with the known LGMD-associated genes or are a part of the same pathways or structures.

Indexed as

AdolescentAdultAgedCalcium ChannelsCalcium Channels, L-TypeCalpainCardiac MyosinsChildChild, PreschoolCollagen Type VIDysferlinExomeExome SequencingFemaleGenetic Predisposition to DiseaseGenetic TestingCACNA1S protein, humanCalcium ChannelsCalcium Channels, L-TypeCalpainCAPN3 protein, humanCardiac MyosinsCOL6A3 protein, humanCollagen Type VIDysferlinDYSF protein, humanMuscle ProteinsMYH7 protein, humanMyosin Heavy ChainsExomeLGMDLimb-girdle muscular dystrophyNext generation sequencingNGSSkeletal muscleWES

Identifiers

PMID29970176
PMCPMC6029161
OpenAlexW2810378246

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.