Evidence map›Paper›PMID 29969955›Full record

ArticleJournal of dental research2018

Activity of Streptococcus mutans VicR Is Modulated by Antisense RNA.

L Lei, R N Stipp, T Chen, S Z Wu, T Hu, M J Duncan

Abstract read
In one paragraph

Article in Journal of dental research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 75 citations in OpenAlex.

  1. Article
  2. Overexpression of ASFrontiers in cellular and infection microbiology · 2026
    Article
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  7. Article
  8. Regulation of biofilm formation by non-coding RNA in prokaryotes.Current research in pharmacology and drug discovery · 2023
    Review
  9. Antimicrobial resistance and mechanisms of epigenetic regulation.Frontiers in cellular and infection microbiology · 2023
    Review
  10. Review
  11. Exopolysaccharides metabolism and cariogenesis ofJournal of oral microbiology · 2023
    Article
  12. Review
  13. Article
  14. Research on Graphene and Its Derivatives in Oral Disease Treatment.International journal of molecular sciences · 2022
    Review
  15. Analysis ofFrontiers in microbiology · 2022
    Article
  16. Review
  17. Review
  18. Article
  19. AntisenseInternational journal of nanomedicine · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

L Lei1 State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Department of Preventive Dentistry, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
R N Stipp2 The Forsyth Institute, Cambridge, MA, USA.ORCID 0000-0001-5305-1299
T Chen2 The Forsyth Institute, Cambridge, MA, USA.
S Z Wu4 West China Hospital, West China Medical School, Sichuan University, Chengdu, China.
T Hu1 State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Department of Preventive Dentistry, West China Hospital of Stomatology, Sichuan University, Chengdu, China.
M J Duncan2 The Forsyth Institute, Cambridge, MA, USA.
Sichuan University · CNUniversidade Estadual de Campinas (UNICAMP) · BRWest China Medical Center of Sichuan University · CN

Funding

Cultivation, Nature, Ecology and Pathogenicity of the Uncultivable Oral MicrobiomR01DE024468 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI ALM, ERIC JOHN, DEWHIRST, FLOYD E · 2014 to 2018
$7.3M
Physiological Interaction Between Probiotic Bacteria and Porphyromonas gingivalisR01DE024308 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI DUNCAN, MARGARET J, HU, LINDEN T · 2014 to 2018
$3.1M
NIDCR NIH HHS R01 DE024308NIDCR NIH HHS R01 DE024468
6 · The paper itself

Abstract

The VicRK 2-component system of Streptococcus mutans regulates genes associated with cell wall biogenesis and biofilm formation. A putative RNase III-encoding gene ( rnc) is located downstream from the vicRKX operon. The goals of this study were to investigate the potential role of VicR in the regulation of adjacent downstream genes and evaluate transcription levels of vicR during planktonic and biofilm growth. Quantitative real-time polymerase chain reaction (qRT-PCR) was used to investigate whether vicRKX and adjacent downstream genes were cotranscribed. Binding of purified recombinant VicR protein to promoter regions of vicR, rnc, and syfA genes was confirmed by electrophoretic mobility shift assay and by chromatin immunoprecipitation analyses. VicR antisense (AS vicR) RNA was detected by Northern blotting and qRT-PCR assays. AS vicR overexpression mutants were constructed, and the biofilm biomass was determined by crystal violet microtiter assay. Adjacent downstream genes rnc, smc, syfA, smu.1511, and syfB were cotranscribed with vicRKX. The predicted promoter regions of vicR, rnc, and syfA genes were directly regulated by VicR. An AS vicR RNA transcript was detected upstream of the rnc gene. Expression of the AS vicR RNA transcript was elevated in planktonic cultures and repressed during biofilm growth. In addition, Western blot data showed that expression of the VicR protein decreased by 35% in planktonic as compared with biofilm cultures. Furthermore, we show that overexpression of AS vicR led to a reduction in biofilm formation. The downstream genes rnc, smc, syfA, smu.1511, and syfB are cotranscribed with vicRKX. VicR is autophosphorylated, and rnc and syfA are directly regulated by VicR. Expression of VicR protein correlated inversely with different levels of AS vicR RNA transcript and growth conditions. The biofilm biomass decreased in the AS vicR overexpression mutant. These data suggest a role for the AS vicR RNA transcript in posttranscriptional regulation of VicR protein production in S. mutans.

Indexed as

Bacterial ProteinsBiofilmsBiomassBlotting, NorthernBlotting, WesternElectrophoretic Mobility Shift AssayGene Expression Regulation, BacterialGenes, BacterialImmunoprecipitationPromoter Regions, GeneticReal-Time Polymerase Chain ReactionRNA, AntisenseRNA InterferenceSignal TransductionStreptococcus mutansBacterial ProteinsRNA, AntisenseYycF protein, Bacteriabacterial geneticsbiofilm growthgene regulationmRNA interferencenon-coding RNA characterizationprotein production

Identifiers

PMID29969955
PMCPMC6262263
OpenAlexW2810428420

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.