Evidence map›Paper›PMID 29969238›Full record

ArticleACS synthetic biology2018

Mutually Orthogonal DNA Replication Systems In Vivo.

Garri A Arzumanyan, Kristin N Gabriel, Arjun Ravikumar, Alex A Javanpour, Chang C Liu

Abstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. In vivo hypermutation and continuous evolution.Nature reviews. Methods primers · 2022
    Article
  7. Reprogramming the genetic code.Nature reviews. Genetics · 2021
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Engineering Polymerases for New Functions.Trends in biotechnology · 2019
    Review
  13. Article
  14. Review
  15. Review
  16. An Adaptable Platform for Directed Evolution in Human Cells.Journal of the American Chemical Society · 2018
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Garri A ArzumanyanDepartment of Biomedical Engineering , University of California , Irvine , California 92697 , United States.
Kristin N GabrielDepartment of Molecular Biology & Biochemistry , University of California , Irvine , California 92697 , United States.
Arjun RavikumarDepartment of Biomedical Engineering , University of California , Irvine , California 92697 , United States.
Alex A JavanpourDepartment of Biomedical Engineering , University of California , Irvine , California 92697 , United States.
Chang C LiuDepartment of Biomedical Engineering , University of California , Irvine , California 92697 , United States.ORCID 0000-0002-3290-2880
University of California, Irvine · US

Funding

Diversity Supplement for A High-Throughput Continuous Evolution System for in vivo Biosensor EngineeringDP2GM119163 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LIU, CHANG C · 2015 to 2017
$2.5M
NIGMS NIH HHS DP2 GM119163
6 · The paper itself

Abstract

The yeast cytoplasmically localized pGKL1/TP-DNAP1 plasmid/DNA polymerase pair forms an orthogonal DNA replication system whose mutation rate can be drastically increased without influencing genomic replication, thereby supporting in vivo continuous evolution. Here, we report that the pGKL2/TP-DNAP2 plasmid/DNA polymerase pair forms a second orthogonal replication system. We show that custom genes can be encoded and expressed from pGKL2, that error-prone TP-DNAP2s can be engineered, and that pGKL2 replication by TP-DNAP2 is both orthogonal to genomic replication in Saccharomyces cerevisiae and mutually orthogonal with pGKL1 replication by TP-DNAP1. This demonstration of two mutually orthogonal DNA replication systems with tunable error rates and properties should enable new applications in cell-based continuous evolution, genetic recording, and synthetic biology at large.

Indexed as

DNA-Directed DNA PolymeraseDNA ReplicationMetabolic EngineeringPlasmidsDNA-Directed DNA PolymeraseDNA replicationin vivo mutagenesislinear plasmidsorthogonal replicationpolymerase engineeringprotein-primed replication

Identifiers

PMID29969238
PMCPMC6177532
OpenAlexW2811133556

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.