Evidence map›Paper›PMID 29969105›Full record

ArticleActa crystallographica. Section F, Structural biology communications2018

A novel bacterial class V dye-decolourizing peroxidase from the extremophile Deinococcus radiodurans: cloning, expression optimization, purification, crystallization, initial characterization and X-ray diffraction analysis.

Kelly Stefany Tuna Frade, Andreia Cecília Pimenta Fernandes, Celia Marisa Silveira, Carlos Frazão, Elin Moe

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kelly Stefany Tuna FradeMacromolecular Crystallography Unit, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Avenida da República - EAN, 2780-157 Oeiras, Portugal.ORCID 0000-0002-9295-982X
Andreia Cecília Pimenta FernandesMacromolecular Crystallography Unit, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Avenida da República - EAN, 2780-157 Oeiras, Portugal.
Celia Marisa SilveiraRaman BioSpectroscopy Laboratory, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Avenida da República - EAN, 2780-157 Oeiras, Portugal.
Carlos FrazãoMacromolecular Crystallography Unit, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Avenida da República - EAN, 2780-157 Oeiras, Portugal.
Elin MoeMacromolecular Crystallography Unit, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB-NOVA), Avenida da República - EAN, 2780-157 Oeiras, Portugal.
Universidade Nova de Lisboa · PT

Funding

COMPETE2020 LISBOA-01-0145-FEDER-007660Fundação para a Ciência e a Tecnologia FRH/BPD/79566/2011Fundação para a Ciência e a Tecnologia PTDC/BBB233 BEP/0561/2014Fundação para a Ciência e a Tecnologia SFRH/BPD/94050/2013Seventh Framework Programme 283570
6 · The paper itself

Abstract

Deinococcus radiodurans is a bacterium with extreme resistance to desiccation and radiation. The resistance mechanism is unknown, but an efficient reactive oxygen species (ROS) scavenging system and DNA-repair and DNA-protection mechanisms are believed to play important roles. Here, the cloning and small- and medium-scale expression tests of a novel dye-decolourizing peroxidase from D. radiodurans (DrDyP) using three different Escherichia coli strains and three different temperatures in order to identify the optimum conditions for the expression of recombinant DrDyP are presented. The best expression conditions were used for large-scale expression and yielded ∼10 mg recombinant DrDyP per litre of culture after purification. Initial characterization experiments demonstrated unusual features with regard to the haem spin state, which motivated the crystallization experiment. The obtained crystals were used for data collection and diffracted to 2.2 Å resolution. The crystals belonged to the trigonal space group P3

Indexed as

Amino Acid SequenceCloning, MolecularCrystallizationDeinococcusGene Expression Regulation, BacterialPeroxidaseX-Ray DiffractionPeroxidaseDeinococcus radioduransdye-decolourizing peroxidasesoxidative stressperoxidasesradiation resistance

Identifiers

PMID29969105
PMCPMC6038450
OpenAlexW2810086882

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.