Evidence map›Paper›PMID 29968722›Full record

ArticleNature communications2018

Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics.

Sarah Auburn, Ernest D Benavente, Olivo Miotto, Richard D Pearson, Roberto Amato, Matthew J Grigg, Bridget E Barber, Timothy William, Irene Handayuni, Jutta Marfurt and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
10.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
  2. Article
  3. bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Metagenomic analysis reveals extreme complexity ofmedRxiv : the preprint server for health sciences · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. No Association between the Plasmodium vivaxAntimicrobial agents and chemotherapy · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 5 countries.

Sarah AuburnGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia. Sarah.Auburn@menzies.edu.au.ORCID http://orcid.org/0000-0002-4638-536X
Ernest D BenaventeFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.ORCID http://orcid.org/0000-0002-4313-4290
Olivo MiottoBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Old Road Campus, Oxford, OX3 7LF, UK.ORCID http://orcid.org/0000-0001-8060-6771
Richard D PearsonBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Old Road Campus, Oxford, OX3 7LF, UK.ORCID http://orcid.org/0000-0002-7386-3566
Roberto AmatoBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Old Road Campus, Oxford, OX3 7LF, UK.
Matthew J GriggGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.
Bridget E BarberGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.ORCID http://orcid.org/0000-0003-1066-7960
Timothy WilliamInfectious Diseases Society Sabah-Menzies School of Health Research Clinical Research Unit, 88300, Kota Kinabalu, Sabah, Malaysia.
Irene HandayuniGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.
Jutta MarfurtGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.
Hidayat TrimarsantoEijkman Institute for Molecular Biology, Jakarta, 10430, Indonesia.
Rintis NoviyantiEijkman Institute for Molecular Biology, Jakarta, 10430, Indonesia.
Kanlaya SriprawatShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Tak, 63110, Thailand.
Francois NostenShoklo Malaria Research Unit, Mahidol-Oxford Tropical Medicine Research Unit, Faculty of Tropical Medicine, Mahidol University, Mae Sot, Tak, 63110, Thailand.ORCID http://orcid.org/0000-0002-7951-0745
Susana CampinoFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.
Taane G ClarkFaculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, Keppel Street, London, WC1E 7HT, UK.ORCID http://orcid.org/0000-0001-8985-9265
Nicholas M AnsteyGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.
Dominic P KwiatkowskiBig Data Institute, Li Ka Shing Centre for Health Information and Discovery, Old Road Campus, Oxford, OX3 7LF, UK.
Ric N PriceGlobal and Tropical Health Division, Menzies School of Health Research and Charles Darwin University, Darwin, NT, 0811, Australia.
Charles Darwin University · AUMahidol University · THUniversity of London · GBWellcome Sanger Institute · GBEijkman Institute for Molecular Biology · IDQueen Elizabeth Hospital · MY

Funding

Comparative incidence and clinical spectrum of Plasmodium knowlesi malaria, a longitudinal study in Sabah, MalaysiaR01AI116472 · NIAID · INFECTIOUS DISEASE SOCIETY KOTA KINABALU · PI WILLIAM, TIMOTHY · 2015 to 2019
$682k
Bill and Melinda Gates Foundation OPP1164105Department of Health | National Health and Medical Research Council (NHMRC) 1037304Department of Health | National Health and Medical Research Council (NHMRC) 1042072Department of Health | National Health and Medical Research Council (NHMRC) 1045156Department of Health | National Health and Medical Research Council (NHMRC) 1074795Department of Health | National Health and Medical Research Council (NHMRC) 1088738Department of Health | National Health and Medical Research Council (NHMRC) 1131932Department of Health | National Health and Medical Research Council (NHMRC) 1135820Medical Research Council MC_PC_15103Medical Research Council MR/K000551/1Medical Research Council MR/M006212/1Medical Research Council MR/M01360X/1Medical Research Council MR/N010469/1Medical Research Council (MRC) M006212Medical Research Council (MRC) MC_PC_15103Medical Research Council (MRC) MR/K000551/1Medical Research Council (MRC) MR/M01360X/1Medical Research Council (MRC) MR/N010469/1NIAID NIH HHS R01 AI116472Wellcome Trust 200909Wellcome Trust 200909/Z/16/ZWellcome Trust 204911Wellcome Trust 204911/Z/16/ZWellcome Trust 206194
6 · The paper itself

Abstract

The incidence of Plasmodium vivax infection has declined markedly in Malaysia over the past decade despite evidence of high-grade chloroquine resistance. Here we investigate the genetic changes in a P. vivax population approaching elimination in 51 isolates from Sabah, Malaysia and compare these with data from 104 isolates from Thailand and 104 isolates from Indonesia. Sabah displays extensive population structure, mirroring that previously seen with the emergence of artemisinin-resistant P. falciparum founder populations in Cambodia. Fifty-four percent of the Sabah isolates have identical genomes, consistent with a rapid clonal expansion. Across Sabah, there is a high prevalence of loci known to be associated with antimalarial drug resistance. Measures of differentiation between the three countries reveal several gene regions under putative selection in Sabah. Our findings highlight important factors pertinent to parasite resurgence and molecular cues that can be used to monitor low-endemic populations at the end stages of P. vivax elimination.

Identifiers

PMID29968722
PMCPMC6030216
OpenAlexW2811182143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.