Evidence map›Paper›PMID 29968715›Full record

ArticleNature communications2018

Novofumigatonin biosynthesis involves a non-heme iron-dependent endoperoxide isomerase for orthoester formation.

Yudai Matsuda, Tongxuan Bai, Christopher B W Phippen, Christina S Nødvig, Inge Kjærbølling, Tammi C Vesth, Mikael R Andersen, Uffe H Mortensen, Charlotte H Gotfredsen, Ikuro Abe and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Talaroterpenoids A-F: Six NewMarine drugs · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Orthoester formation in fungal meroterpenoid austalide F biosynthesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. CRISPR/Cas9-Based Genome Editing and Its Application inJournal of fungi (Basel, Switzerland) · 2022
    Review
  17. Article
  18. New Trends and Future Opportunities in the Enzymatic Formation of C-C, C-N, and C-O bonds.Chembiochem : a European journal of chemical biology · 2022
    Review
  19. Review
  20. In silico analyses of maleidride biosynthetic gene clusters.Fungal biology and biotechnology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Yudai MatsudaDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark. ymatsuda@cityu.edu.hk.ORCID http://orcid.org/0000-0001-5650-4732
Tongxuan BaiGraduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Christopher B W PhippenDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.
Christina S NødvigDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.
Inge KjærbøllingDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.
Tammi C VesthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.
Mikael R AndersenDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0003-4794-6808
Uffe H MortensenDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0002-7794-7273
Charlotte H GotfredsenDepartment of Chemistry, Technical University of Denmark, Kemitorvet, 2800, Kgs. Lyngby, Denmark.ORCID http://orcid.org/0000-0002-7386-119X
Ikuro AbeGraduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan. abei@mol.f.u-tokyo.ac.jp.ORCID http://orcid.org/0000-0002-3640-888X
Thomas O LarsenDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark. tol@bio.dtu.dk.ORCID http://orcid.org/0000-0002-3362-5707
Technical University of Denmark · DKThe University of Tokyo · JPCity University of Hong Kong · HK

Funding

Japan Society for the Promotion of Science (JSPS) JP15H01836Japan Society for the Promotion of Science (JSPS) JP16H06443Villum Fonden (Villum Foundation) VKR023427
6 · The paper itself

Abstract

Novofumigatonin (1), isolated from the fungus Aspergillus novofumigatus, is a heavily oxygenated meroterpenoid containing a unique orthoester moiety. Despite the wide distribution of orthoesters in nature and their biological importance, little is known about the biogenesis of orthoesters. Here we show the elucidation of the biosynthetic pathway of 1 and the identification of key enzymes for the orthoester formation by a series of CRISPR-Cas9-based gene-deletion experiments and in vivo and in vitro reconstitutions of the biosynthesis. The novofumigatonin pathway involves endoperoxy compounds as key precursors for the orthoester synthesis, in which the Fe(II)/α-ketoglutarate-dependent enzyme NvfI performs the endoperoxidation. NvfE, the enzyme catalyzing the orthoester synthesis, is an Fe(II)-dependent, but cosubstrate-free, endoperoxide isomerase, despite the fact that NvfE shares sequence homology with the known Fe(II)/α-ketoglutarate-dependent dioxygenases. NvfE thus belongs to a class of enzymes that gained an isomerase activity by losing the α-ketoglutarate-binding ability.

Indexed as

AspergillusBiosynthetic PathwaysCatalysisCRISPR-Cas SystemsFungal ProteinsGene DeletionIronKetoglutaric AcidsPeroxidesProstaglandin-E SynthasesTerpenesFungal ProteinsIronKetoglutaric AcidsnovofumigatoninPeroxidesProstaglandin-E SynthasesTerpenes

Identifiers

PMID29968715
PMCPMC6030086
OpenAlexW2810363107

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.