Evidence map›Paper›PMID 29968680›Full record

ArticleActa crystallographica. Section D, Structural biology2018

Engineering glycoside hydrolase stability by the introduction of zinc binding.

Thomas L Ellinghaus, Jose H Pereira, Ryan P McAndrew, Ditte H Welner, Andy M DeGiovanni, Joel M Guenther, Huu M Tran, Taya Feldman, Blake A Simmons, Kenneth L Sale and 1 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Thomas L EllinghausJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Jose H PereiraJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Ryan P McAndrewJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Ditte H WelnerJoint BioEnergy Institute, Emeryville, CA 94608, USA.ORCID 0000-0001-9297-4133
Andy M DeGiovanniJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Joel M GuentherJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Huu M TranJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Taya FeldmanJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Blake A SimmonsJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Kenneth L SaleJoint BioEnergy Institute, Emeryville, CA 94608, USA.
Paul D AdamsJoint BioEnergy Institute, Emeryville, CA 94608, USA.

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

The development of robust enzymes, in particular cellulases, is a key step in the success of biological routes to `second-generation' biofuels. The typical sources of the enzymes used to degrade biomass include mesophilic and thermophilic organisms. The endoglucanase J30 from glycoside hydrolase family 9 was originally identified through metagenomic analyses of compost-derived bacterial consortia. These studies, which were tailored to favor growth on targeted feedstocks, have already been shown to identify cellulases with considerable thermal tolerance. The amino-acid sequence of J30 shows comparably low identity to those of previously analyzed enzymes. As an enzyme that combines a well measurable activity with a relatively low optimal temperature (50°C) and a modest thermal tolerance, it offers the potential for structural optimization aimed at increased stability. Here, the crystal structure of wild-type J30 is presented along with that of a designed triple-mutant variant with improved characteristics for industrial applications. Through the introduction of a structural Zn

Indexed as

BiocatalysisCrystallography, X-RayEnzyme StabilityGlycoside HydrolasesMutant ProteinsProtein BindingProtein EngineeringTemperatureZincGlycoside HydrolasesMutant ProteinsZincglycoside hydrolasesprotein engineeringthermal stabilityX-ray crystallography

Identifiers

PMID29968680
PMCPMC6038386

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.