Evidence map›Paper›PMID 29968678›Full record

ArticleActa crystallographica. Section D, Structural biology2018

A substrate selected by phage display exhibits enhanced side-chain hydrogen bonding to HIV-1 protease.

Ian W Windsor, Ronald T Raines

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. ApaH decaps NpNature chemical biology · 2026
    Article
  2. Circular zymogens of human ribonuclease 1.Protein science : a publication of the Protein Society · 2019
    Article
  3. AnACS catalysis · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ian W WindsorDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Ronald T RainesDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Massachusetts Institute of Technology · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
STRUCTURE--FUNCTION ANALYSIS OF RIBONUCLEASE AR01GM044783 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RAINES, RONALD T · 1990 to 2021
$7.1M
NIGMS NIH HHS R01 GM044783NIGMS NIH HHS T32 GM008349NIH HHS R01 GM044783NIH HHS T32 GM008349
6 · The paper itself

Abstract

Crystal structures of inactive variants of HIV-1 protease bound to peptides have revealed how the enzyme recognizes its endogenous substrates. The best of the known substrates is, however, a nonnatural substrate that was identified by directed evolution. The crystal structure of the complex between this substrate and the D25N variant of the protease is reported at a resolution of 1.1 Å. The structure has several unprecedented features, especially the formation of additional hydrogen bonds between the enzyme and the substrate. This work expands the understanding of molecular recognition by HIV-1 protease and informs the design of new substrates and inhibitors.

Indexed as

Peptide LibraryBinding SitesCrystallography, X-RayDirected Molecular EvolutionGenetic VariationHIV ProteaseHumansHydrogen BondingPeptidesProtein BindingSubstrate SpecificityHIV Proteasep16 protease, Human immunodeficiency virus 1Peptide LibraryPeptidesHIV-1 proteasehydrogen bondsmolecular recognitionphage display

Identifiers

PMID29968678
PMCPMC6038388
OpenAlexW2810713180

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.