Evidence map›Paper›PMID 29967444›Full record

ArticleNature genetics2018

Adaptation and conservation insights from the koala genome.

Rebecca N Johnson, Denis O'Meally, Zhiliang Chen, Graham J Etherington, Simon Y W Ho, Will J Nash, Catherine E Grueber, Yuanyuan Cheng, Camilla M Whittington, Siobhan Dennison and 44 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 134 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
134citing papers in PubMed, 2 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

134 citing papers in PubMed, 2 syntheses or guidelines pooled it, 283 citations in OpenAlex.

  1. Current status and future directions ofFrontiers in veterinary science · 2026
    Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Article
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  8. Article
  9. Koala Conservation: The Utility of Art and Genome Banking.Advances in experimental medicine and biology · 2026
    Review
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  11. Article
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  14. Article
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74 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

54 authors at 17 institutions in 6 countries.

Rebecca N JohnsonAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia. rebecca.johnson@austmus.gov.au.ORCID http://orcid.org/0000-0003-3035-2827
Denis O'MeallySchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Zhiliang ChenSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, New South Wales, Australia.
Graham J EtheringtonEarlham Institute, Norwich Research Park, Norwich, UK.
Simon Y W HoSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-0361-2307
Will J NashEarlham Institute, Norwich Research Park, Norwich, UK.
Catherine E GrueberSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-8179-1822
Yuanyuan ChengSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Camilla M WhittingtonSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Siobhan DennisonAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Emma PeelSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Wilfried HaertyEarlham Institute, Norwich Research Park, Norwich, UK.
Rachel J O'NeillDepartment of Molecular and Cell Biology and Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Don ColganAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Tonia L RussellRamaciotti Centre for Genomics, University of New South Wales, Kensington, New South Wales, Australia.
David E Alquezar-PlanasAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Val AttenbrowAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Jason G BraggResearch School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.
Parice A BrandiesSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Amanda Yoon-Yee ChongEarlham Institute, Norwich Research Park, Norwich, UK.
Janine E DeakinInstitute for Applied Ecology, University of Canberra, Bruce, Australian Capital Territory, Australia.
Federica Di PalmaEarlham Institute, Norwich Research Park, Norwich, UK.
Zachary DudaDepartment of Molecular and Cell Biology and Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Mark D B EldridgeAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Kyle M EwartAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Carolyn J HoggSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Greta J FrankhamAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Arthur GeorgesInstitute for Applied Ecology, University of Canberra, Bruce, Australian Capital Territory, Australia.
Amber K GillettAustralia Zoo Wildlife Hospital, Beerwah, Queensland, Australia.
Merran GovendirSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Alex D GreenwoodDepartment of Wildlife Diseases, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Takashi HayakawaDepartment of Wildlife Science (Nagoya Railroad Co., Ltd.), Primate Research Institute, Kyoto University, Inuyama, Japan.
Kristofer M HelgenAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Matthew HobbsAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-6879-1369
Clare E HolleleyAustralian National Wildlife Collection, National Research Collections Australia, CSIRO, Canberra, Australian Capital Territory, Australia.
Thomas N HeiderDepartment of Molecular and Cell Biology and Institute for Systems Genomics, University of Connecticut, Storrs, CT, USA.
Elizabeth A JonesSydney School of Veterinary Science, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
Andrew KingAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Danielle MaddenAnimal Research Centre, Faculty of Science, Health, Education & Engineering, University of the Sunshine Coast, Maroochydore, Queensland, Australia.
Jennifer A Marshall GravesResearch School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia.
Katrina M MorrisThe Roslin Institute and R(D)SVS, University of Edinburgh, Easter Bush, Midlothian, UK.
Linda E NeavesAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.ORCID http://orcid.org/0000-0002-5626-1029
Hardip R PatelJohn Curtin School of Medical Research, Australian National University, Acton, Australian Capital Territory, Australia.
Adam PolkinghorneAnimal Research Centre, Faculty of Science, Health, Education & Engineering, University of the Sunshine Coast, Maroochydore, Queensland, Australia.
Marilyn B RenfreeSchool of BioSciences, University of Melbourne, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-4589-0436
Charles RobinSchool of BioSciences, University of Melbourne, Melbourne, Victoria, Australia.ORCID http://orcid.org/0000-0002-7733-6763
Ryan SalinasSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, New South Wales, Australia.
Kyriakos TsangarasDepartment of Translational Genetics, The Cyprus Institute of Neurology and Genetics, Nicosia, Cyprus.
Paul D WatersSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, New South Wales, Australia.
Shafagh A WatersSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, New South Wales, Australia.
Belinda WrightAustralian Museum Research Institute, Australian Museum, Sydney, New South Wales, Australia.
Marc R WilkinsSchool of Biotechnology and Biomolecular Sciences, University of New South Wales, Kensington, New South Wales, Australia.
Peter TimmsFaculty of Science, Health, Education & Engineering, University of the Sunshine Coast, Maroochydore, Queensland, Australia.
Katherine BelovSchool of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, New South Wales, Australia.
The University of Sydney · AUAustralian Museum · AUUNSW Sydney · AUAustralian National University · AUNorwich Research Park · GBUniversity of Connecticut · USUniversity of the Sunshine Coast · AUThe University of Melbourne · AUUniversity of Canberra · AUAustralian National Wildlife Collection · AUAustralia Zoo · AUCentre for Human Genetics · GBCyprus Institute of Neurology and Genetics · CYKyoto University · JPLeibniz Institute for Zoo and Wildlife Research · DERoslin Institute · GBUniversity of East Anglia · GB

Funding

A singular opportunity to determine the evolutionary genetics of retroviral invasR01GM092706 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ROCA, ALFRED LUIS · 2011 to 2013
$849k
Biotechnology and Biological Sciences Research Council BB/J004669/1Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9817NIGMS NIH HHS R01 GM092706
6 · The paper itself

Abstract

The koala, the only extant species of the marsupial family Phascolarctidae, is classified as 'vulnerable' due to habitat loss and widespread disease. We sequenced the koala genome, producing a complete and contiguous marsupial reference genome, including centromeres. We reveal that the koala's ability to detoxify eucalypt foliage may be due to expansions within a cytochrome P450 gene family, and its ability to smell, taste and moderate ingestion of plant secondary metabolites may be due to expansions in the vomeronasal and taste receptors. We characterized novel lactation proteins that protect young in the pouch and annotated immune genes important for response to chlamydial disease. Historical demography showed a substantial population crash coincident with the decline of Australian megafauna, while contemporary populations had biogeographic boundaries and increased inbreeding in populations affected by historic translocations. We identified genetically diverse populations that require habitat corridors and instituting of translocation programs to aid the koala's survival in the wild.

Indexed as

Adaptation, PhysiologicalAnimalsAustraliaChlamydia InfectionsCytochrome P-450 Enzyme SystemFemaleGenomeMolecular Sequence AnnotationPhascolarctidaeTranslocation, GeneticCytochrome P-450 Enzyme System

Identifiers

PMID29967444
PMCPMC6197426
OpenAlexW2810416640

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.