Evidence map›Paper›PMID 29967440›Full record

ArticleScientific reports2018

Widespread distribution of prophage-encoded virulence factors in marine Vibrio communities.

Daniel Castillo, Kathryn Kauffman, Fatima Hussain, Panos Kalatzis, Nanna Rørbo, Martin F Polz, Mathias Middelboe

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 118 citations in OpenAlex.

  1. Prophage-Derived Molecules as Anti-Antibiotics (Basel, Switzerland) · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Re-evaluating what makes a phage unsuitable for therapy.npj antimicrobials and resistance · 2025
    Review
  7. Review
  8. Review
  9. Review
  10. Prophages in marineISME communications · 2025
    Article
  11. Unveiling Hidden Allies: In Silico Discovery of Prophages inAntibiotics (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Public health aspects ofEFSA journal. European Food Safety Authority · 2024
    Article
  16. The roles of ABCB1/P-glycoprotein drug transporters in regulating gut microbes and inflammation: insights from animal models, old and new.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  17. Article
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Daniel CastilloMarine Biological Section, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark.
Kathryn KauffmanDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.ORCID 0000-0002-1997-947X
Fatima HussainDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
Panos KalatzisMarine Biological Section, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark.ORCID 0000-0003-3029-783X
Nanna RørboMarine Biological Section, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark.
Martin F PolzDepartment of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA.
Mathias MiddelboeMarine Biological Section, University of Copenhagen, Strandpromenaden 5, DK-3000, Helsingør, Denmark. mmiddelboe@bio.ku.dk.ORCID 0000-0002-9587-9171
University of Copenhagen · DKMassachusetts Institute of Technology · US

Funding

Therapeutic Cancer Vaccine for Non-Hodgkin's LymphomaR43CA132390 · NCI · XEME BIOPHARMA, INC · PI ROBB, RICHARD J · 2008 to 2008
$167k
National Science Foundation (NSF) OCE-1435993Natur og Univers, Det Frie Forskningsråd (Natural Sciences, Danish Council for Independent Research) 12-132390Strategiske Forskningsråd (Danish Council for Strategic Research) 7014-00080
6 · The paper itself

Abstract

Prophages are known to encode important virulence factors in the human pathogen Vibrio cholerae. However, little is known about the occurrence and composition of prophage-encoded traits in environmental vibrios. A database of 5,674 prophage-like elements constructed from 1,874 Vibrio genome sequences, covering sixty-four species, revealed that prophage-like elements encoding possible properties such as virulence and antibiotic resistance are widely distributed among environmental vibrios, including strains classified as non-pathogenic. Moreover, we found that 45% of Vibrio species harbored a complete prophage-like element belonging to the Inoviridae family, which encode the zonula occludens toxin (Zot) previously described in the V. cholerae. Interestingly, these zot-encoding prophages were found in a variety of Vibrio strains covering both clinical and marine isolates, including strains from deep sea hydrothermal vents and deep subseafloor sediments. In addition, the observation that a spacer from the CRISPR locus in the marine fish pathogen V. anguillarum strain PF7 had 95% sequence identity with a zot gene from the Inoviridae prophage found in V. anguillarum strain PF4, suggests acquired resistance to inoviruses in this species. Altogether, our results contribute to the understanding of the role of prophages as drivers of evolution and virulence in the marine Vibrio bacteria.

Indexed as

Aquatic OrganismsBacterial ToxinsClustered Regularly Interspaced Short Palindromic RepeatsGenome, BacterialOligopeptidesPhylogenyPhylogeographyProphagesVibrioVirulence FactorsBacterial Toxinslarazotide acetateOligopeptidesVirulence Factors

Identifiers

PMID29967440
PMCPMC6028584
OpenAlexW2810340995

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.