Evidence map›Paper›PMID 29967426›Full record

ArticleScientific reports2018

Analysis of Purines and Pyrimidines distribution over miRNAs of Human, Gorilla, Chimpanzee, Mouse and Rat.

Jayanta Kumar Das, Pabitra Pal Choudhury, Adwitiya Chaudhuri, Sk Sarif Hassan, Pallab Basu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jayanta Kumar DasApplied Statistics Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata, 700108, West Bengal, India. dasjayantakumar89@gmail.com.ORCID 0000-0002-7630-7194
Pabitra Pal ChoudhuryApplied Statistics Unit, Indian Statistical Institute, 203 B.T. Road, Kolkata, 700108, West Bengal, India.
Adwitiya ChaudhuriDepartment of Zoology, Pingla Thana Mahavidyalaya, Paschim Medinipur, 722140, West Bengal, India.
Sk Sarif HassanDepartment of Mathematics, Pingla Thana Mahavidyalaya, Paschim Medinipur, 722140, West Bengal, India.
Pallab BasuInternational Centre for Theoretical Sciences, TIFR, Bangalore, 560089, Karnataka, India.
Indian Statistical Institute · INInternational Centre for Theoretical Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meaningful words in English need vowels to break up the sounds that consonants make. The Nature has encoded her messages in RNA molecules using only four alphabets A, U, C and G in which the nine member double-ring bases (adenine (A) and Guanine (G)) are purines, while the six member single-ring bases (cytosine (C) and uracil (U)) are pyrimidines. Four bases A, U, C and G of RNA sequences are divided into three kinds of classifications according to their chemical properties. One of the three classifications, the purine-pyrimidine class is important. In understanding the distribution (organization) of purines and pyrimidines over some of the non-coding RNAs, all miRNAs of the three species (human, gorilla and chimpanzee) of Hominidae family and two species (mouse and rat) from of Muridae family are considered. The distribution of purines and pyrimidines over miRNA shows deviation from randomness. Based on the quantitative metrics (fractal dimension, Hurst exponent, Hamming distance, distance pattern of purine-pyrimidine, density distribution of purine-pyrimidine and Shannon entropy) five different clusters have been made for the five species. We have observed some couple of results including the closeness of different clusters among the five species.

Indexed as

AnimalsGorilla gorillaHumansMiceMicroRNAsPan troglodytesPurinesPyrimidinesRatsSpecies SpecificityMicroRNAsMIRN6124 microRNA, humanPurinesPyrimidines

Identifiers

PMID29967426
PMCPMC6028587
OpenAlexW2810782186

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.