Evidence map›Paper›PMID 29966650›Full record

ArticleBiochemical and biophysical research communications2018

PB1 and UBA domains of p62 are essential for aggresome-like induced structure formation.

Maleen Cabe, David J Rademacher, Amelia B Karlsson, Srinivas Cherukuri, Joanna C Bakowska

Open access · hybridAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular mechanisms underlying p62-dependent secretion of the Alzheimer-associated ubiquitin variant UBBProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Article
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  9. LLPS of SQSTM1/p62 and NBR1 as outcomes of lysosomal stress response limits cancer cell metastasis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Residues TRetrovirology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation?BioEssays : news and reviews in molecular, cellular and developmental biology · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Maleen CabeDepartment of Molecular Pharmacology and Therapeutics, Loyola University Chicago, Maywood, IL 60153, USA.
David J RademacherCore Imaging Facility and Department of Microbiology and Immunology, Loyola University Chicago, Maywood, IL 60153, USA.
Amelia B KarlssonDepartment of Molecular Pharmacology and Therapeutics, Loyola University Chicago, Maywood, IL 60153, USA.
Srinivas CherukuriDepartment of Molecular Pharmacology and Therapeutics, Loyola University Chicago, Maywood, IL 60153, USA.
Joanna C BakowskaDepartment of Molecular Pharmacology and Therapeutics, Loyola University Chicago, Maywood, IL 60153, USA. Electronic address: JBakowska@luc.edu.
Loyola University Chicago · US

Funding

The role of spartin in autophagy of lipid droplets: Implications for SPG20 diseasR01NS073967 · NINDS · LOYOLA UNIVERSITY CHICAGO · PI BAKOWSKA, JOANNA C · 2012 to 2016
$1.6M
NINDS NIH HHS R01 NS073967
6 · The paper itself

Abstract

ALIS are large, transient, cytosolic aggregates that serve as storage compartments for ubiquitin-tagged defective ribosomal products. We determined the importance of the protein p62 in the formation of ALIS and demonstrated that two domains of p62-PB1 and UBA-are essential for ALIS assembly. Those two major binding domains of p62, also known as sequestosome 1, were shown to play a critical role in the formation of autophagosomes or cytoplasmic aggregates. Specifically, the PB1 domain is essential for self-oligomerization, and the UBA domain allows p62 to bind to polyubiquitin chains or ubiquitinated proteins. After stimulation of RAW 264.7 macrophages with lipopolysaccharide, we observed a significant decrease in the number of cells with ALIS. Importantly, cells overexpressing either a PB1 mutant or UBA-deleted p62 construct also exhibited a substantially diminished number of cells containing ALIS. Since both p62 and ubiquitin are found in ALIS, we evaluated the dynamics of YFP-tagged p62 in ALIS. In contrast to the findings of a previous study that evaluated GFP-tagged ubiquitin motility in ALIS, we determined that YFP-tagged p62 has very limited mobility. Lastly, we determined that GST-tagged full-length p62 binds to Lys-63-linked polyubiquitin chains but not to Lys-48-linked chains. Overall, our findings provide insight on the essential role that p62, particularly its PB1 and UBA domains, has in the formation of ALIS.

Indexed as

AnimalsCytosolHumansLipopolysaccharidesMicePolyubiquitinProtein AggregatesProtein BindingProtein DomainsRAW 264.7 CellsSequestosome-1 ProteinUbiquitinLipopolysaccharidesPolyubiquitinProtein AggregatesSequestosome-1 ProteinSqstm1 protein, mouseUbiquitinALISFRAPp62PB1UBAUbiquitin

Identifiers

PMID29966650
PMCPMC6640847
OpenAlexW2811380068

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.