Evidence map›Paper›PMID 29966419›Full record

ArticleThe journal of physical chemistry. A2018

Classical Drude Polarizable Force Field Model for Methyl Phosphate and Its Interactions with Mg

Francesco Villa, Alexander D MacKerell, Benoît Roux, Thomas Simonson

Erratum issuedAbstract read
In one paragraph

Article in The journal of physical chemistry. A, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Francesco VillaLaboratoire de Biochimie, CNRS UMR7654, Ecole Polytechnique , Palaiseau 91128 , France.
Alexander D MacKerellDepartment of Pharmaceutical Sciences, School of Pharmacy , University of Maryland , Baltimore , Maryland 21201 , United States.ORCID http://orcid.org/0000-0001-8287-6804
Benoît RouxDepartment of Biochemistry and Molecular Biology , University of Chicago , Chicago , Illinois 60637 , United States.ORCID http://orcid.org/0000-0002-5254-2712
Thomas SimonsonLaboratoire de Biochimie, CNRS UMR7654, Ecole Polytechnique , Palaiseau 91128 , France.ORCID http://orcid.org/0000-0002-5117-7338

Funding

Polarizable Force Field for Proteins and LipidsR01GM072558 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2005 to 2023
$5.1M
Oligonucleotide Conformational HeterogeneityR01GM051501 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI MACKERELL, ALEXANDER D · 2003 to 2018
$3.6M
HALOGEN FREE ENERGY DATABASE FOR RATIONAL DRUG DESIGNR29GM051501 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI MACKERELL, ALEXANDER D. · 1996 to 2000
$108k
NIGMS NIH HHS R01 GM051501NIGMS NIH HHS R01 GM072558NIGMS NIH HHS R29 GM051501
6 · The paper itself

Abstract

Phosphate groups are essential components of nucleic acids and proteins, whose interactions with solvent, metal ions, and ionic side chains help control folding and binding. Methyl phosphate (MP) represents a simple analog of phosphate moieties that are post-translation modifications in proteins and present at the termini of nucleic acids, among other environments. In the present study, we optimized parameters for use in polarizable molecular dynamics simulations of MP in its mono- and dianionic forms, MP

Identifiers

PMID29966419
PMCPMC6062457

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.