Evidence map›Paper›PMID 29961840›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2019

The Uropathogenic Escherichia coli Subclone Sequence Type 131-H30 Is Responsible for Most Antibiotic Prescription Errors at an Urgent Care Clinic.

Veronika Tchesnokova, Kim Riddell, Delia Scholes, James R Johnson, Evgeni V Sokurenko

Open access · hybridAbstract read
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. A First Report on Multidrug-ResistantAntibiotics (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Gut residentmedRxiv : the preprint server for health sciences · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Genomic Characterization of UropathogenicInternational journal of molecular sciences · 2023
    Article
  9. Colonization withPathogens (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Genomic surveillance ofMicrobial genomics · 2020
    Article
  19. Pandemic Uropathogenic Fluoroquinolone-resistant Escherichia coli Have Enhanced Ability to Persist in the Gut and Cause Bacteriuria in Healthy Women.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Veronika TchesnokovaDepartment of Microbiology, University of Washington School of Medicine, Seattle.
Kim RiddellKaiser Permanente Washington, Seattle.
Delia ScholesKaiser Permanente Washington Health Research Institute, Seattle.
James R JohnsonVeterans Affairs Medical Center and University of Minnesota, Minneapolis.
Evgeni V SokurenkoDepartment of Microbiology, University of Washington School of Medicine, Seattle.
University of Washington · USKaiser Permanente · USKaiser Permanente Washington Health Research Institute · USUniversity of Minnesota Medical Center · US

Funding

Molecular Clonality of Uropathogenic E. ColiR01AI106007 · NIAID · UNIVERSITY OF WASHINGTON · PI SOKURENKO, EVGENI VENIAMINOVIC · 2014 to 2024
$7.5M
Clonotyping Technology for Prediction of Antibiotic ResistanceR41AI116114 · NIAID · IDGENOMICS, INC. · PI APRIKIAN, PAVEL, SOKURENKO, EVGENI VENIAMINOVIC · 2015 to 2015
$214k
CSRD VA I01 CX000192NIAID NIH HHS R01 AI106007NIAID NIH HHS R41 AI116114
6 · The paper itself

Abstract

backgroundThe pandemic spread of antibiotic resistance increases the likelihood of ineffective empirical therapy. The recently emerged fluoroquinolone-resistant Escherichia coli sequence type (ST) 131-H30R subclone (H30) is a leading cause of multidrug-resistant urinary tract infection (UTI) and bloodstream infection worldwide.

methodsWe studied the relative impact of H30 on the likelihood that bacteria isolated from urine of urgent care patients would be resistant to the empirically prescribed antibiotic regimen for UTI.

resultsOf 750 urinalysis-positive urine samples from urgent care patients with suspected UTI, 306 (41%) yielded E. coli, from 35 different clonal groups (clonotypes). H30 predominated (14% prevalence overall), especially among older patients (age ≥70 years: 26%) and those with diabetes (43%) or urinary catheterization (60%). Resistance to the empirically selected antibiotic regimen occurred in 16% (40/246) of patients overall, 28% (20/71) of older patients, 30% (8/27) of patients with diabetes, 60% (3/5) of catheterized patients, and 71% (22/30) of those with H30. H30's contribution to such mismatched antibiotic selection was 55% overall, 70% among older patients, and 100% among patients with diabetes or a urinary catheter. Among patients with ≥2 of these factors (older age, diabetes, or urinary catheter), 24% of all urinalysis-positive urine samples yielded H30, with a 92% likelihood of resistance to the selected empirical therapy.

conclusionsThe multidrug-resistant H30 subclone of E. coli ST131 is responsible for the great majority of mismatched empirical antibiotic prescriptions for suspected UTI at an urgent care clinic among patients ≥70 years old or with diabetes or urinary catheterization.

Indexed as

Drug Resistance, Multiple, BacterialAgedAnti-Bacterial AgentsDrug PrescriptionsEscherichia coli InfectionsFemaleHumansLogistic ModelsMaleMultivariate AnalysisPrevalenceRetrospective StudiesUrinary Tract InfectionsUropathogenic Escherichia coliAnti-Bacterial Agentsclonal diagnosticsempiric antibiotic therapyEscherichia coli ST131-H30urgent careurinary tract infections

Identifiers

PMID29961840
PMCPMC6376094
OpenAlexW2811066077

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.