Evidence map›Paper›PMID 29961767›Full record

ArticleGenetics in medicine : official journal of the American College of Medical Genetics2019

Genome sequencing as a first-line genetic test in familial dilated cardiomyopathy.

Andre E Minoche, Claire Horvat, Renee Johnson, Velimir Gayevskiy, Sarah U Morton, Alexander P Drew, Kerhan Woo, Aaron L Statham, Ben Lundie, Richard D Bagnall and 7 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Mechanisms of RBM20 Cardiomyopathy: Insights From Model Systems.Circulation. Genomic and precision medicine · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. The role of noncoding genetic variants in cardiomyopathy.Frontiers in cardiovascular medicine · 2023
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Cardiovascular Genetics: The Role of Genetics in Predicting Risk.The Medical clinics of North America · 2022
    Review
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 2 countries.

Andre E MinocheKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
Claire HorvatMolecular Cardiology and Biophysics Division, Victor Chang Cardiac Research Institute Sydney, Sydney, New South Wales, Australia.
Renee JohnsonMolecular Cardiology and Biophysics Division, Victor Chang Cardiac Research Institute Sydney, Sydney, New South Wales, Australia.
Velimir GayevskiyKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
Sarah U MortonBoston Children's Hospital, Boston, Massachusetts, USA.
Alexander P DrewKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
Kerhan WooGenome.One, Sydney, New South Wales, Australia.
Aaron L StathamGenome.One, Sydney, New South Wales, Australia.
Ben LundieGenome.One, Sydney, New South Wales, Australia.
Richard D BagnallAgnes Ginges Centre for Molecular Cardiology, Centenary Institute, Sydney, New South Wales, Australia.
Jodie InglesAgnes Ginges Centre for Molecular Cardiology, Centenary Institute, Sydney, New South Wales, Australia.
Christopher SemsarianAgnes Ginges Centre for Molecular Cardiology, Centenary Institute, Sydney, New South Wales, Australia.
J G SeidmanHoward Hughes Medical Institute, Boston, Massachusetts, USA.
Christine E SeidmanDepartment of Genetics, Harvard Medical School, Boston, Massachusetts, USA.
Marcel E DingerKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
Mark J CowleyKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
Diane FatkinMolecular Cardiology and Biophysics Division, Victor Chang Cardiac Research Institute Sydney, Sydney, New South Wales, Australia. d.fatkin@victorchang.edu.au.
Garvan Institute of Medical Research · AUUniversity of Sydney · AUUNSW Sydney · AUVictor Chang Cardiac Research Institute · AUBoston Children's Hospital · USBrigham and Women's Hospital · USCentenary Institute · AUHarvard University · USSt Vincent's Hospital · AU

Funding

Defining Pathways from Gene Mutation to Heart FailureR01HL080494 · NHLBI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CHEN, CHRISTOPHER S, SEIDMAN, CHRISTINE E · 2005 to 2024
$9.4M
Howard Hughes Medical InstituteNHLBI NIH HHS R01 HL080494
6 · The paper itself

Abstract

purposeWe evaluated genome sequencing (GS) as an alternative to multigene panel sequencing (PS) for genetic testing in dilated cardiomyopathy (DCM).

methodsForty-two patients with familial DCM underwent PS and GS, and detection rates of rare single-nucleotide variants and small insertions/deletions in panel genes were compared. Loss-of-function variants in 406 cardiac-enriched genes were evaluated, and an assessment of structural variation was performed.

resultsGS provided broader and more uniform coverage than PS, with high concordance for rare variant detection in panel genes. GS identified all PS-identified pathogenic or likely pathogenic variants as well as two additional likely pathogenic variants: one was missed by PS due to low coverage, the other was a known disease-causing variant in a gene not included on the panel. No loss-of-function variants in the extended gene set met clinical criteria for pathogenicity. One BAG3 structural variant was classified as pathogenic.

conclusionOur data support the use of GS for genetic testing in DCM, with high variant detection accuracy and a capacity to identify structural variants. GS provides an opportunity to go beyond suites of established disease genes, but the incremental yield of clinically actionable variants is limited by a paucity of genetic and functional evidence for DCM association.

Indexed as

AdolescentAdultAgedAged, 80 and overBase SequenceCardiomyopathy, DilatedFemaleGenetic Predisposition to DiseaseGenetic TestingHumansINDEL MutationMaleMiddle AgedPolymorphism, Single NucleotideSequence Analysis, DNAWhole Genome SequencingFamilial dilated cardiomyopathyGenetic testinggenome sequencingMolecular diagnosisPanel sequencing

Identifiers

PMID29961767
PMCPMC7271716
OpenAlexW2810498650

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.